Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1050
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative ...    29   3.1  
At3g07570.1 68416.m00907 membrane protein, putative similar to m...    28   4.1  
At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1) ide...    27   7.1  

>At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative
           similar to delta7 sterol C-5 desaturase GI:5031219 from
           [Arabidopsis thaliana]
          Length = 279

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -3

Query: 435 SNYMKCF*IYYLKKNVYSIYKRSI 364
           S ++ CF IYYLK NVY + K SI
Sbjct: 57  SGFLWCFYIYYLKLNVY-VPKESI 79


>At3g07570.1 68416.m00907 membrane protein, putative similar to
           membrane protein SDR2 (GI:1747306) [Mus musculus]
          Length = 369

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 110 VVIVKFVYILITY*INNKQTKNTFCNIRVELNELTY 3
           V I+ FV I ++  +N +Q     CN  + LN+LT+
Sbjct: 6   VSIIIFVLIALSTIVNAQQAATDSCNSTLPLNDLTF 41


>At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1)
           identical to sterol-C5-desaturase GB:AAD12944 GI:4234768
           from [Arabidopsis thaliana]
          Length = 281

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 435 SNYMKCF*IYYLKKNVY 385
           S ++ CF IYYLK NVY
Sbjct: 56  SGFLWCFYIYYLKINVY 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,022,414
Number of Sequences: 28952
Number of extensions: 172023
Number of successful extensions: 298
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)