Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1049
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    28   1.4  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   5.5  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   9.7  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 375  LEMCEFERCEVSDAISIWQQLAESD*KQVLNVLKNSDLIRDHY---TNLS 515
            L  C+FE  +  + ISI+      D  +V  VL    +  DHY   TNL+
Sbjct: 1100 LSSCKFEGYDPQNLISIYPPARFGDVTEVTKVLNRESVKLDHYLTKTNLN 1149


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 405 VSDAISIWQQLAESD*KQVLNVLKNSDLIRDHYTNL 512
           V D  ++  QLA++  + VLN L    LIRD   N+
Sbjct: 153 VGDVNALLDQLADASSEYVLNFLPYLTLIRDTRVNI 188


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 474 LIHLKLVFSQTPRAVARLI 418
           LIH+ L F Q PR +A +I
Sbjct: 46  LIHIPLSFLQQPRVIAEII 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,093
Number of Sequences: 5004
Number of extensions: 39034
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)