Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1049
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0095 + 15979884-15980234                                         29   3.3  
02_05_0118 - 25991356-25991686,25991797-25992092,25992405-259931...    28   7.6  

>01_04_0095 + 15979884-15980234
          Length = 116

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 604 CRCICPCRSPLCSTTRRLEDRAR 536
           CRC CP  SP+ S   R   RAR
Sbjct: 30  CRCPCPGASPMASPCCRTRSRAR 52


>02_05_0118 -
           25991356-25991686,25991797-25992092,25992405-25993109,
           25993197-25993298,25993519-25993846,25994337-25994461,
           25994555-25994628,25995110-25995191,25995278-25995391,
           25995475-25995575,25995663-25995752,25996316-25996562
          Length = 864

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
 Frame = +1

Query: 7   KQVQNESASQQPVYLVRSYVRHLLSYF-ASLNLTFFVV-LTEYTYSFIYNLI-KHH*RAS 177
           K+V  E   +  + +V      + +Y   S   T+ +  +TEYT + IY+ I KH  RA 
Sbjct: 93  KEVYEEGVKEVALSVVSGINSSIFAYGQTSSGKTYTMTGVTEYTVADIYDYINKHEERAF 152

Query: 178 VKKFLNLRSLFKFSENLRD-VAAPSTAL 258
           V KF    ++  ++E +RD ++A +T L
Sbjct: 153 VLKF---SAIEIYNEVIRDLLSAENTPL 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,569,828
Number of Sequences: 37544
Number of extensions: 228891
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)