Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1049
         (659 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094724-1|AAM11077.1|  788|Drosophila melanogaster GH21171p pro...    29   7.4  
AY069584-1|AAL39729.1|  195|Drosophila melanogaster LD32469p pro...    29   7.4  
AF232775-1|AAF43415.1|  195|Drosophila melanogaster SR family sp...    29   7.4  
AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA...    29   7.4  
AE014134-2204|AAS64684.1|  112|Drosophila melanogaster CG5442-PA...    29   7.4  
AE014134-2203|AAF53192.1|  195|Drosophila melanogaster CG5442-PB...    29   7.4  

>AY094724-1|AAM11077.1|  788|Drosophila melanogaster GH21171p
           protein.
          Length = 788

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 504 CSDHGSNPSSLIHLKLVFSQTPRAVARLILRQ 409
           C ++GS P+S  HL LV S    A A   L Q
Sbjct: 230 CGNYGSGPNSAQHLPLVMSMPSAAAAAAHLMQ 261


>AY069584-1|AAL39729.1|  195|Drosophila melanogaster LD32469p
           protein.
          Length = 195

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 512 QLMRY*GPSRPVLKSSGRRAEGG 580
           Q+ RY  PS P   SSGRR  GG
Sbjct: 97  QMARYGRPSSPTRSSSGRRGGGG 119


>AF232775-1|AAF43415.1|  195|Drosophila melanogaster SR family
           splicing factor SC35 protein.
          Length = 195

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 512 QLMRY*GPSRPVLKSSGRRAEGG 580
           Q+ RY  PS P   SSGRR  GG
Sbjct: 97  QMARYGRPSSPTRSSSGRRGGGG 119


>AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA
            protein.
          Length = 2759

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 504  CSDHGSNPSSLIHLKLVFSQTPRAVARLILRQ 409
            C ++GS P+S  HL LV S    A A   L Q
Sbjct: 2201 CGNYGSGPNSAQHLPLVMSMPSAAAAAAHLMQ 2232


>AE014134-2204|AAS64684.1|  112|Drosophila melanogaster CG5442-PA,
           isoform A protein.
          Length = 112

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 512 QLMRY*GPSRPVLKSSGRRAEGG 580
           Q+ RY  PS P   SSGRR  GG
Sbjct: 14  QMARYGRPSSPTRSSSGRRGGGG 36


>AE014134-2203|AAF53192.1|  195|Drosophila melanogaster CG5442-PB,
           isoform B protein.
          Length = 195

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 512 QLMRY*GPSRPVLKSSGRRAEGG 580
           Q+ RY  PS P   SSGRR  GG
Sbjct: 97  QMARYGRPSSPTRSSSGRRGGGG 119


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,187,376
Number of Sequences: 53049
Number of extensions: 406565
Number of successful extensions: 982
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)