Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1049
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.9  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 82  YFASLNLTFFVVLTEYTYSFIYNLIKHH*RASVKKFLNLRSLFKFS 219
           +F  + + F   + +Y Y  + +++  H R  +    NL    KFS
Sbjct: 65  FFDQMGVHFVGFVGQYGYDRVLSVLGRHVRDFLNGLDNLHEYLKFS 110


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 85  FASLNLTFFVVLTEY 129
           FA LN+T++++  EY
Sbjct: 413 FAVLNVTYWIMFAEY 427


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 203 LCLNLVKIYATLPLRL 250
           L L L  ++ATLPLRL
Sbjct: 136 LLLMLYLLFATLPLRL 151


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 94  LNLTFFVVLTEYTYSFIYNLI 156
           +++TF V++   T  + +NLI
Sbjct: 219 IDITFVVIIRRRTLYYFFNLI 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,224
Number of Sequences: 438
Number of extensions: 2512
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)