Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1048
         (639 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQB9 Cluster: Nucleosome assembly protein isoform 1; ...    36   0.82 
UniRef50_A5CFP7 Cluster: Putative uncharacterized protein; n=1; ...    36   1.1  
UniRef50_Q22SS7 Cluster: Putative uncharacterized protein; n=1; ...    34   2.5  

>UniRef50_Q1HQB9 Cluster: Nucleosome assembly protein isoform 1;
           n=7; Coelomata|Rep: Nucleosome assembly protein isoform
           1 - Bombyx mori (Silk moth)
          Length = 395

 Score = 35.9 bits (79), Expect = 0.82
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 639 GKGPAENPAECKQQ 598
           GKGPAENPAECKQQ
Sbjct: 382 GKGPAENPAECKQQ 395


>UniRef50_A5CFP7 Cluster: Putative uncharacterized protein; n=1;
           Orientia tsutsugamushi Boryong|Rep: Putative
           uncharacterized protein - Orientia tsutsugamushi (strain
           Boryong) (Rickettsia tsutsugamushi)
          Length = 166

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = -3

Query: 553 TTMILVLIFL-FSLLRMNFAVT*STDGNSNNVCTRIFLLKKEM**RLAWFALYNHQNLCS 377
           T+++L++ FL F+ ++ NF +      NS  VC    +L   +  +L   A+Y+H N+  
Sbjct: 77  TSLVLIITFLVFTAIQKNFKLLDYC--NSYIVCLMYLMLFTSL--KLFLIAIYDHININY 132

Query: 376 TFLIMAMTVQLFCHPPLSK 320
             LI  +     C+ PLSK
Sbjct: 133 QILIFKILTSSLCYFPLSK 151


>UniRef50_Q22SS7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1107

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 403 VQTKLIVITFLFLAKIFWYIHYYCYH 480
           +++ ++   +L+L+KIFW   YYCYH
Sbjct: 348 IKSHMLSQYYLYLSKIFWNSKYYCYH 373


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,705,284
Number of Sequences: 1657284
Number of extensions: 8841060
Number of successful extensions: 19039
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19029
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)