Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1048
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    29   0.75 
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    27   3.0  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   4.0  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   7.0  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    25   9.2  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   9.2  

>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 571 SLPELYTTMILVLI-FLFSLLRMNFAVT*STDGNSNNVCTRIFL 443
           S+P+ Y  + ++    +FS ++MN A T ST GNS N  T  FL
Sbjct: 203 SIPDPYCILPIINAGLMFSGMQMNRANTASTIGNSTNWRTFFFL 246


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 614 LSANSSSYLIVMQFEFTGALYNNDSGADFPVFSLENEFRSN 492
           L   S+ Y++    +F G L + +SG   PV    NE R+N
Sbjct: 218 LRNKSADYVLKHCEQFEGFLLDEESGEVLPVSDYCNEIRNN 258


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 412 WFALYNHQNLCSTFLIMAMTVQLFCHPPLSKSR 314
           W+++ N  +L +  L MA TVQ + H P  +SR
Sbjct: 349 WYSISNDPSLANKRLEMAFTVQEY-HSPNGQSR 380


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 457 YIHYYCYHQSTKLLRNSFSREKTGKSAPESLLYKAPVNSNCITI 588
           +I  YC + S K +  S+++ K  +  PE+  Y + + ++  TI
Sbjct: 257 FIKKYCPNTSVKEVVASYAKWKESELLPEATPYNSTMGNSANTI 300


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 418 IVITFLFLAKIFWYIHYYCYHQSTKLLRNSF-SREKTGKSAPESLLYKAPVNSNCITI 588
           ++I   F+A I    ++ C +Q  +LLR+ F       +   E+ +Y  P+    IT+
Sbjct: 31  VLIPIFFIALIIIKRYHSCTYQKNRLLRSIFCCMSIDDEEELETDMYDLPIVEPSITL 88


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 19/80 (23%), Positives = 33/80 (41%)
 Frame = +3

Query: 105 ITITYNHWMNIECLNLPVDESL*QXXXXXXXXXXXXXXLLS*MKLNKSLRRE*LLVLLYH 284
           +  T N+ +NIE LN+PV + L                +L   +  +    +  L+ + +
Sbjct: 338 VNATNNNRINIEMLNIPVPKQLFDQIPNLPPNVKIWRDVLELGQSQRLPPEQLKLIGMLY 397

Query: 285 RFYFLLSLQHRDFDRGGWQN 344
           R +  + LQHR       QN
Sbjct: 398 RKHLQIILQHRQQQLNKIQN 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,069
Number of Sequences: 5004
Number of extensions: 40690
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)