Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1048
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36357| Best HMM Match : Colicin_im (HMM E-Value=2.1)                29   3.2  
SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)                  28   7.4  
SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)               28   7.4  
SB_28647| Best HMM Match : Ribosomal_L36 (HMM E-Value=1)               28   7.4  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           27   9.7  
SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)                   27   9.7  

>SB_36357| Best HMM Match : Colicin_im (HMM E-Value=2.1)
          Length = 132

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 418 IVITFLFLAKIFWYIHYYCYHQSTKLLRNSFSREKTGKSAPES 546
           +V+TFLF+  I  ++  Y   +  K L+    +EK  K   +S
Sbjct: 83  LVVTFLFITSIIIFVELYRSGRCLKTLKQKRDKEKRKKGLSDS 125


>SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
          Length = 640

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 458 YQNIFAKKRNVITISLVCTLQPSELVQHIPHN 363
           + NI     N+ T SL+ TL  S L  +IPHN
Sbjct: 161 FLNILLTLSNLPTDSLLVTLDVSSLYTNIPHN 192


>SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)
          Length = 417

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 458 YQNIFAKKRNVITISLVCTLQPSELVQHIPHN 363
           + NI     N+ T SL+ TL  S L  +IPHN
Sbjct: 118 FLNILLTLSNLPTDSLLVTLDVSSLYTNIPHN 149


>SB_28647| Best HMM Match : Ribosomal_L36 (HMM E-Value=1)
          Length = 812

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 473 VTISRLSYCEIHSQERKQENQHQNHC 550
           V+ISR S  + H+   +Q+N+H +HC
Sbjct: 760 VSISRSSIQQHHNHICQQQNRHNHHC 785


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 333  RLYQNHGAADSIGNKTYDIATLITTHV*ETC 241
            RLYQN GAAD    K +DI +   T   + C
Sbjct: 1153 RLYQNDGAADRRTGKNHDIESRPQTGHEQVC 1183


>SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)
          Length = 600

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 318 DFDRGGWQNNCTVIAIMRNVLHK 386
           DF R  W+ NC VI ++ N++ K
Sbjct: 481 DFWRMIWEQNCRVIVMITNIIEK 503


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,544,439
Number of Sequences: 59808
Number of extensions: 294177
Number of successful extensions: 558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)