Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1047
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    28   0.95 
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   3.8  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   5.1  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    25   6.7  
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    25   8.9  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +2

Query: 215 IPYPVKVHVPQPYPLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPSRY 391
           +  PV  H     P  N +L QL +      +  NP   +R     Y S ST  SPS+Y
Sbjct: 289 VQQPVAYHAFVQSPTENGTLPQLPKNE----SVVNPPPLRRSSTMNYKSVSTTTSPSKY 343


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 211 LFYRVGDVLFDGVGNRNFLNDSY 143
           L  +VGD  F  VGN N LN +Y
Sbjct: 38  LIEKVGDETFRWVGNENELNGAY 60


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 212 KIPYPVKVHVPQPYPLSNMSLTQLKRLSRYQF 307
           KIP  V  H+  P P S  S   +KR+S ++F
Sbjct: 71  KIPSAVP-HISTPNPSSGASTPNIKRVSDFKF 101


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 211 LFYRVGDVLFDGVGNRNFLNDSY 143
           L  +VGD  F  VGN N LN +Y
Sbjct: 37  LIEKVGDEKFRWVGNTNELNGAY 59


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 531 CIRGKEQAMYGNLYGVRYFLLYWVRSGHVHFDWNMNFLFNG 409
           CIR     +   + GV     Y +R  + HF  N+N   NG
Sbjct: 67  CIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENG 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,299
Number of Sequences: 5004
Number of extensions: 44185
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)