Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1047
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 35 0.062
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 33 0.19
SB_55797| Best HMM Match : HC2 (HMM E-Value=8.3) 31 0.76
SB_31589| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15) 31 0.76
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 30 1.3
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19) 30 1.3
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) 30 1.3
SB_9722| Best HMM Match : EGF_CA (HMM E-Value=2.4e-06) 30 1.3
SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027) 30 1.8
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 29 3.1
SB_6614| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_2633| Best HMM Match : Drf_FH1 (HMM E-Value=4) 29 4.1
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 28 5.4
SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44) 28 5.4
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 28 7.1
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 28 7.1
SB_23241| Best HMM Match : EGF_CA (HMM E-Value=6.3e-30) 28 7.1
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_39411| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_32103| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_51821| Best HMM Match : DUF920 (HMM E-Value=4.9) 27 9.4
SB_50201| Best HMM Match : BCNT (HMM E-Value=9.8) 27 9.4
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19) 27 9.4
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 27 9.4
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2) 27 9.4
SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0) 27 9.4
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 35.5 bits (78), Expect = 0.035
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 510 PAPYPVYKEVQVPVKVHVDRPYPVHIP---KPVPYPVEKP 620
P P PV+ Q+ KV + PYPV P KP+PYPV P
Sbjct: 458 PFPIPVHSPPQIE-KVPIPFPYPVPSPPQIKPMPYPVPVP 496
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Frame = +3
Query: 510 PAPYPVYKEVQVPVKV-HVDRPYPVH-------IPKPVPYPVEKP 620
P +PV P +V HV P PVH +P P PYPV P
Sbjct: 439 PRIHPVIVPFHTPPRVEHVPFPIPVHSPPQIEKVPIPFPYPVPSP 483
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 34.7 bits (76), Expect = 0.062
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 516 PYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPV 611
P+PV V+VP +V V P PV +P P+ PV
Sbjct: 214 PFPVRVPVRVPFRVPVRVPVPVRVPVPIHSPV 245
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 513 APYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEK 617
AP+P + P+ +++ P P +P+PVP P K
Sbjct: 111 APFPRMPLISPPLPMYIPVPVPQPVPQPVPQPASK 145
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 561 VDRPYPVHIPKPVPYPVEKP 620
+ P P++IP PVP PV +P
Sbjct: 119 ISPPLPMYIPVPVPQPVPQP 138
>SB_55797| Best HMM Match : HC2 (HMM E-Value=8.3)
Length = 317
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 485 TP*RFPYMACSLPRIQRGTSTSKGPCG*TLPRAYSQT 595
TP + Y S+ R GTS + CG ++ RAYS T
Sbjct: 39 TPIKRAYSGTSIKRAYSGTSIKRAYCGTSIKRAYSGT 75
>SB_31589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 31.1 bits (67), Expect = 0.76
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 246 NPTRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ-TRPRQG 389
+P RC T + + + TS TA R+ + PST PSRQ + PR G
Sbjct: 6 SPFRCDTGRETAPTESRATSLSTAGFCGRRSRSPPSTRPSRQGSAPRTG 54
>SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)
Length = 1605
Score = 31.1 bits (67), Expect = 0.76
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -3
Query: 489 GVRYFLLYWVRSGHVHFDWNMNFLFNGVRFWHIYLDGDGSVDWDMYWVRHLLFDWVGLRY 310
G+ + ++ WV GH DW L + V W + L G VDW + HL+ DWVGL +
Sbjct: 786 GLGHSVVDWVGLGHSVVDWVG--LGHSVVDW-VGL-GHSVVDW--VGLGHLVVDWVGLGH 839
Query: 309 --VNW 301
V+W
Sbjct: 840 SVVDW 844
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 516 PYPVYKEVQVPVKVHVDRPYPVHIPKPVPY 605
P PV V+VPV +H P P +P+P+P+
Sbjct: 1093 PVPVPVPVRVPVPMHQQSPLP--MPRPIPH 1120
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 480 TLPRKGSRTWPAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYP 608
T P + PA + V VPV V V P P+H P+P P
Sbjct: 1073 TTPSNATPLAPAQKFIAIYVPVPVPVPVRVPVPMHQQSPLPMP 1115
>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1883
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 127 GGPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPVVKHVPYPVK 285
GG R R S +PRR ++ P PR++A S +LP + V P +
Sbjct: 1392 GGHMLRTVRRPLSAPMPRRSTSISDLARDLPTPRQAAHSASLPDLTMVQTPAR 1444
>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
Length = 754
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 127 GGPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPVVKHVPYPVK 285
GG R R S +PRR ++ P PR++A S +LP + V P +
Sbjct: 263 GGHMLRTVRRPLSAPMPRRSTSISDLARDLPTPRQAAHSASLPDLTMVQTPAR 315
>SB_9722| Best HMM Match : EGF_CA (HMM E-Value=2.4e-06)
Length = 673
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 224 PVKVHVPQPYPLSNMSLTQLKRLSRYQF 307
P +V VP P P +NM+ +LK RY++
Sbjct: 518 PTEVCVPNPCPSTNMTCVELKGTPRYRY 545
>SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)
Length = 406
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +3
Query: 504 TWPAPYPVYKEVQVPVKVHVDRP--YPVHIPKPVPYPVEKP 620
++PA YP P P YP P P PYP P
Sbjct: 70 SYPASYPASYPASYPASYPASYPASYPTSYPYPSPYPAPYP 110
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +3
Query: 486 PRKGSRTWPAPYPVYKEVQVPVKVHVDRP--YPVHIPKPVPYP 608
P ++PA YP P P YP P P PYP
Sbjct: 68 PSSYPASYPASYPASYPASYPASYPASYPTSYPYPSPYPAPYP 110
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 29.5 bits (63), Expect = 2.3
Identities = 25/95 (26%), Positives = 39/95 (41%)
Frame = -3
Query: 594 VWEYARGRVYPHGPLLVLVPLCIRGKEQAMYGNLYGVRYFLLYWVRSGHVHFDWNMNFLF 415
+W Y G Y G L+ +C+R + ++ GV Y+ W + VH+ +
Sbjct: 329 LWAYTIGVHY--GRTLLAFTMCVR-YWRTLWAYTIGVHYWRTLWAYTIGVHYGRTLLAYT 385
Query: 414 NGVRFWHIYLDGDGSVDWDMYWVRHLLFDWVGLRY 310
GV +W V YW R LL +G+ Y
Sbjct: 386 IGVHYWRTLWAYTIGV---RYW-RTLLAYAIGVHY 416
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +1
Query: 175 PRRKAHPLPGRKENPLPRESARSPTLPVVKHVPYPVKEI 291
P P P P PR + + P+ P KH YP I
Sbjct: 184 PHTSIPPTPHTSIPPTPRPTYKHPSYPSYKHPSYPSSHI 222
>SB_6614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 194 PYPVEKKIPYPVKVHVPQPYPLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLT 349
P+P K+ PY + ++ L + T R+ +Y T + T++K++C T
Sbjct: 169 PHPATKETPYELMMNREIRTKLEHFQQTNRHRIGKYDATAAS-TKNKQKCTT 219
>SB_2633| Best HMM Match : Drf_FH1 (HMM E-Value=4)
Length = 179
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 516 PYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
P V+ + P+KVH+ +P+ + P +P++ P
Sbjct: 33 PIKVHLPNKHPIKVHLPNKHPIKVHLPNKHPIKHP 67
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 516 PYPVYKEVQVPVKVHV--DRPYPVHIPKPVPYPVEKP 620
P V+ + P+KVH+ + P VH+P +P V P
Sbjct: 97 PIKVHLPNEHPIKVHLPNEHPIKVHLPNKLPIKVHLP 133
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 516 PYPVYKEVQVPVKVHV--DRPYPVHIPKPVPYPVEKP 620
P V+ ++P+KVH+ + P VH+P P V P
Sbjct: 117 PIKVHLPNKLPIKVHLPNEHPIKVHLPNKHPIKVHLP 153
>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 546 PVKVHVDRPYPVHIPKPVPYPVEKP 620
PV+V V P PV +P P PV P
Sbjct: 844 PVRVTVATPPPVRVPAATPLPVRVP 868
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 169 SLPRRKAHPLPGRKENPLPRESARSPTLPVVKHVP 273
S P A P P E PLP S P P+ H+P
Sbjct: 196 SPPIPTAPPTPPMPETPLPPGSPHIPPAPLHPHIP 230
>SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
Length = 350
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 308 TYRNPTQSKRRCLTQYMSQSTDPSPSRYMCQNLTPLKRKFMFQSKCTC 451
T R +QS+R C + S S P+P+R L P+ + + + K TC
Sbjct: 307 TIRRQSQSRRNCYSVISSNSPSPAPNR----RLLPINEEALIE-KETC 349
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 510 PAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
P PV +P + ++RP P P P P+E+P
Sbjct: 463 PLERPVPAVTCLPTHLPLERPVPAVTRLPTPLPLERP 499
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +3
Query: 486 PRKGSRTWPAPYPVYKEVQV--PVKVHVDRPYPVHIPKPVPYPVEK 617
P G R +P+P + + P K V P+P P P P E+
Sbjct: 1496 PDPGERQISSPFPAERRIPPLDPAKRRVSPPFPAERRTPTPDPGER 1541
>SB_23241| Best HMM Match : EGF_CA (HMM E-Value=6.3e-30)
Length = 200
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 224 PVKVHVPQPYPLSNMSLTQLKRLSRYQ 304
P +V VP P P +NM+ +LK RY+
Sbjct: 77 PNEVCVPNPCPSANMTCVELKGTPRYK 103
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = +3
Query: 243 PNPTRCQTCPLPS*RDCQGTSSRTATLPSRKEGALP----STCPSRQTRPRQGICARTLP 410
P T+ T LPS + T T TLPS K+ P +T PS + TLP
Sbjct: 235 PTTTQQTTTTLPSTKQPTTTQQTTTTLPSTKQPTTPQLTTTTFPSTKQPTTTQQTTATLP 294
>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 285 RDCQGTSSRTATLPSRKEGALPSTCPSRQT-RP 380
R CQ T S P + A+P CP+ QT RP
Sbjct: 169 RSCQNTISSIPLKPGLEGYAMPRKCPTDQTGRP 201
>SB_39411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 127 GGPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPVVKHVPYPVK 285
GG R S +PRR ++ P PR++A S +LP + V P +
Sbjct: 143 GGHMLRTVSRPLSAPMPRRSTSISDLARDLPTPRQAAHSVSLPDLTMVQTPAR 195
>SB_32103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 172 LPRRKAHPLPGRKENPLPRESARSPTLPVVKHVPYPVKEIVKV 300
+ R +A G++++ +PRE +S P PYP + K+
Sbjct: 152 IDRARARYHGGKRQSQIPREQRKSQIPPWTAQKPYPPVDKYKI 194
>SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 264 TCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPRQGIC 395
T PLP + TS+ +P+ +G + +T PS+Q+ G C
Sbjct: 316 TDPLPDEEGGKVTSNEEEVVPAVSQGVVEATSPSQQSLHDFGEC 359
>SB_51821| Best HMM Match : DUF920 (HMM E-Value=4.9)
Length = 403
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 127 GGPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPVVKHVPYPVK 285
GG R S +PRR ++ P PR++A S +LP + V P +
Sbjct: 291 GGHMLRTVSRPLSAPMPRRSTSISDLARDLPTPRQAAHSVSLPDLTMVQTPAR 343
>SB_50201| Best HMM Match : BCNT (HMM E-Value=9.8)
Length = 254
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 488 P*RFPYMACSLPRIQRGTSTSKGPCG*TLPRAYSQT 595
P R+ Y AC P R STS GP G + P S+T
Sbjct: 89 PDRYRYEACG-PLFYRTGSTSWGPSGKSAPEEGSRT 123
>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1026
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 127 GGPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPVVKHVPYPVK 285
GG R S +PRR ++ P PR++A S +LP + V P +
Sbjct: 306 GGHMLRTVSRPLSAPMPRRSTSISDLARDLPTPRQAAHSVSLPDLTMVQTPAR 358
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 163 SCSLPRRKAHPLPGRKENPLPRESARSPTLPVVKHV 270
S +PRR L +E P PR+S RS +LP + +V
Sbjct: 373 SAPMPRRSISDLA--RELPTPRQSVRSVSLPDLTNV 406
>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 510 PAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYP 608
P P PV K V+ +D P P+ +P P P P
Sbjct: 376 PGPIPVPK-----VQTTIDMPGPIDMPDPTPVP 403
>SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)
Length = 953
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 127 GGPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPVVKHVPYPVK 285
GG R S +PRR ++ P PR++A S +LP + V P +
Sbjct: 407 GGHMLRTVSRPLSAPMPRRSTSISDLARDLPTPRQAAHSVSLPDLTMVQTPAR 459
>SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)
Length = 1038
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 519 YPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
YP+ +V P V + P+P+ P+ YPV P
Sbjct: 416 YPIQCQVATPFNV-MSLPHPMSSRYPIQYPVATP 448
>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1113
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 386 RYMCQNLTPLKRKFMFQSKCTCPLLTQ*RRKYLTP*RFPYMACSLPRI 529
R+ +N L K F+ K +CP LT RR+ +FP+ SLP I
Sbjct: 111 RWEEENRMELNMKKTFEMKQSCPSLTLCRRR-----KFPFRKRSLPII 153
>SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 234 CTFPNPTRCQTCPLPS*RDCQGTSSRTATLPSR 332
C P C +CPLP CQ + PSR
Sbjct: 478 CASCPPPGCASCPLPGCASCQPPGCASCPGPSR 510
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,780,649
Number of Sequences: 59808
Number of extensions: 370228
Number of successful extensions: 1778
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1746
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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