Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1047
(623 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56270.1 68418.m07022 WRKY family transcription factor 31 0.82
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 31 0.82
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 29 1.9
At5g57870.2 68418.m07239 eukaryotic translation initiation facto... 29 2.5
At5g57870.1 68418.m07238 eukaryotic translation initiation facto... 29 2.5
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu... 29 2.5
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu... 29 2.5
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 29 2.5
At1g48160.1 68414.m05375 signal recognition particle 19 kDa prot... 29 2.5
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 29 3.3
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot... 29 3.3
At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1... 28 4.4
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 28 4.4
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 28 4.4
At1g77970.1 68414.m09086 hydroxyproline-rich glycoprotein family... 28 4.4
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00... 28 4.4
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie... 28 5.8
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 28 5.8
At2g38820.2 68415.m04769 expressed protein contains Pfam profile... 27 7.7
At2g38820.1 68415.m04768 expressed protein contains Pfam profile... 27 7.7
At2g35230.2 68415.m04322 VQ motif-containing protein contains PF... 27 7.7
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF... 27 7.7
At2g32960.1 68415.m04040 tyrosine specific protein phosphatase f... 27 7.7
At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical ... 27 7.7
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 27 7.7
At1g52030.2 68414.m05870 myrosinase-binding protein, putative (F... 27 7.7
At1g52030.1 68414.m05869 myrosinase-binding protein, putative (F... 27 7.7
>At5g56270.1 68418.m07022 WRKY family transcription factor
Length = 687
Score = 30.7 bits (66), Expect = 0.82
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 502 REPLRGKVLSSLLGKERARALRLEHELSFQRGKVL 398
R P G + SS +G+E++ LE ELS G+V+
Sbjct: 17 RSPSPGTLFSSAIGEEKSSKRVLERELSLNHGQVI 51
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 30.7 bits (66), Expect = 0.82
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 510 PAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
P P PV+ P VH P PV+ P P P PV P
Sbjct: 535 PPPPPVHSP---PPPVHSPPPPPVYSPPPPPPPVHSP 568
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -2
Query: 277 GKGHV*QRVGLGNVHFHGVGDFLFYRVGDVLFDGVGN 167
G G V Q VG+G+V GVGD VGDV DGVG+
Sbjct: 187 GVGDVGQ-VGVGDVGQGGVGDVGQGGVGDVGRDGVGD 222
Score = 27.5 bits (58), Expect = 7.7
Identities = 25/65 (38%), Positives = 33/65 (50%)
Frame = -2
Query: 361 GHVLGKAPSFRLGRVAVRELVP*QSL*LGKGHV*QRVGLGNVHFHGVGDFLFYRVGDVLF 182
GHV G+ +L + +E+ P S + V Q V G+V GVGD VGDV
Sbjct: 124 GHVRGRGT--QLQQPPPQEVPPSSS----QAQVSQGVAPGDVGQGGVGDVGRDGVGDVGR 177
Query: 181 DGVGN 167
DGVG+
Sbjct: 178 DGVGD 182
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -2
Query: 280 LGKGHV*QRVGLGNVHFHGVGDFLFYRVGDVLFDGVGN 167
+G G V Q G+G+V GVGD VGDV DGVG+
Sbjct: 194 VGVGDVGQG-GVGDVGQGGVGDVGRDGVGDVGRDGVGD 230
>At5g57870.2 68418.m07239 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 776
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 537 VQVPVKVHVDRPYPVHIPKPVPYPVEKPR 623
V PV V +RP P VP PVEKP+
Sbjct: 574 VSRPVTVSAERPAQSVAPLTVPVPVEKPQ 602
>At5g57870.1 68418.m07238 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 780
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 537 VQVPVKVHVDRPYPVHIPKPVPYPVEKPR 623
V PV V +RP P VP PVEKP+
Sbjct: 578 VSRPVTVSAERPAQSVAPLTVPVPVEKPQ 606
>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 486 PRKGSRTWPAPYPVYKEVQVPVKVHVDRPYPVHIPKPV 599
PR G R P P VY+ +P V P+ H P P+
Sbjct: 112 PRDGERRSPLPL-VYRSPSLPTTVSSSDPHLTHAPVPM 148
>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 486 PRKGSRTWPAPYPVYKEVQVPVKVHVDRPYPVHIPKPV 599
PR G R P P VY+ +P V P+ H P P+
Sbjct: 112 PRDGERRSPLPL-VYRSPSLPTTVSSSDPHLTHAPVPM 148
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 516 PYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
P P+Y P VH P P++ P P P++KP
Sbjct: 361 PTPIYSPPVKPPPVHKP-PTPIYSPPVKPPPIQKP 394
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 516 PYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
P P+Y P VH P P++ P P PV KP
Sbjct: 428 PTPIYSPPVKPPPVHKP-PTPIYSPPVKPPPVHKP 461
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 516 PYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
P P+Y P VH P P++ P P PV KP
Sbjct: 192 PTPIYSPPIKPPPVHKP-PTPIYSPPIKPPPVHKP 225
>At1g48160.1 68414.m05375 signal recognition particle 19 kDa
protein, putative / SRP19, putative similar to signal
recognition particle 19 kDa protein subunit SRP19
GI:624221 [Oryza sativa (japonica cultivar-group)];
contains Pfam profile: PF01922 SRP19 protein
Length = 145
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 209 KKIPYPVKVHVPQPYPLSNMSLTQLK-RLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPS 385
K + P V + + YP M + +++ +L R T NP + R+ L Q +++ P
Sbjct: 50 KHLKLPSAVEIDKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPE 109
Query: 386 RYMCQNLTPLKRK 424
R Q K++
Sbjct: 110 RVKKQEAQKAKKQ 122
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Frame = +3
Query: 510 PAPYPVYK-----EVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
P P PVYK E+ P+ P P I P P PV KP
Sbjct: 223 PPPVPVYKPPPKVELPPPIPKKPCPPKPPKIEHPPPVPVYKP 264
>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
similar to SP|P13709 Female sterile homeotic protein
(Fragile-chorion membrane protein) {Drosophila
melanogaster}; contains Pfam profile PF00439:
Bromodomain
Length = 487
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 507 WPAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
+PAP P + P+ V P P P P P PV P
Sbjct: 252 FPAPAPSIAPIVEPLPAIVPSPSPSSPPPPPPPPVAAP 289
>At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1.3)
plant glutamate receptor family, PMID:11379626
Length = 860
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = -3
Query: 552 LLVLVPLCIRGKEQAMYGNL---YGVRYFLLYWVRSGH 448
L VLV LC+R K + + NL +R+F +++VRS H
Sbjct: 802 LAVLVILCLRDKWEILVDNLDLSQRLRHFRIHFVRSIH 839
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 172 LPRRKAHPLPGRKENPLPRESARSPTLP 255
+P K P+P K P+P S SP++P
Sbjct: 39 VPSPKPKPVPSPKPKPVPSPSVPSPSVP 66
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +2
Query: 206 EKKIPYPVKVHVPQPYPLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPS 385
+ + P + P + S TQ + S+ Q ++ +QS+ + +Q SQS SPS
Sbjct: 753 QSQSPSQTRAQSPSQAQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPS 812
Query: 386 RYMCQN 403
+ Q+
Sbjct: 813 QTQTQS 818
>At1g77970.1 68414.m09086 hydroxyproline-rich glycoprotein family
protein
Length = 76
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/41 (29%), Positives = 15/41 (36%)
Frame = +3
Query: 486 PRKGSRTWPAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYP 608
P + P P P K + P P IP+P P P
Sbjct: 22 PEPSPESEPEPAPTSKPKSTSTPTPIPEPAPTPIPEPAPAP 62
>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
F-box domain
Length = 435
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 510 PAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
P P P+ + + + +H+ P P+ +P P+P + P
Sbjct: 356 PMPMPMPMPMPMHMHMHMHMPMPMAMPMPMPIAMAMP 392
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +3
Query: 510 PAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
P P ++ + +P+ + + P P+ + P+P P+ P
Sbjct: 364 PMPMHMHMHMHMPMPMAMPMPMPIAMAMPMPMPMPMP 400
>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
PIR:S53363
Length = 438
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 308 TYRNPTQSKRRCLTQYMSQSTDPSPSRYMCQNLTPLKRK 424
T R+ + K+ TQ + ++ SP R + ++LTP RK
Sbjct: 127 TIRSSSVPKKTTTTQIQASASVSSPKRTVSRSLTPSSRK 165
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +3
Query: 486 PRKGSRTWPAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
P S T P P + Q P + PVH P P PV+ P
Sbjct: 728 PTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPVQSP 772
>At2g38820.2 68415.m04769 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 310
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 227 VKVHVPQPYPLSNMSLTQLKRLSRYQFTYRNPTQ 328
V VP P + M ++LKRL QFT +N ++
Sbjct: 15 VSEEVPYPETMRQMPKSRLKRLFERQFTNKNVSE 48
>At2g38820.1 68415.m04768 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 288
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 227 VKVHVPQPYPLSNMSLTQLKRLSRYQFTYRNPTQ 328
V VP P + M ++LKRL QFT +N ++
Sbjct: 15 VSEEVPYPETMRQMPKSRLKRLFERQFTNKNVSE 48
>At2g35230.2 68415.m04322 VQ motif-containing protein contains
PF05678: VQ motif
Length = 295
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 486 PRKGSRTWPAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKPR 623
P+ P P P +Q P++ + P P +P PVP+ + PR
Sbjct: 125 PQPQQHMMPGPQP-RMNMQGPLQPNQYLPPPGLVPSPVPHNLPSPR 169
>At2g35230.1 68415.m04321 VQ motif-containing protein contains
PF05678: VQ motif
Length = 402
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 486 PRKGSRTWPAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKPR 623
P+ P P P +Q P++ + P P +P PVP+ + PR
Sbjct: 232 PQPQQHMMPGPQP-RMNMQGPLQPNQYLPPPGLVPSPVPHNLPSPR 276
>At2g32960.1 68415.m04040 tyrosine specific protein phosphatase
family protein contains Pfam profile PF03162: Putative
tyrosine phosphatase family
Length = 257
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 242 PQPYPLSNMSLTQLKRLSRYQFTYRNPTQSKRRCL 346
P+PYP +NM + +S +QF SK +CL
Sbjct: 101 PEPYPENNMQFLKSNGISLFQFGIEG---SKSKCL 132
>At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical to
plastid heme oxygenase (HY1) [Arabidopsis thaliana]
GI:4877362, heme oxygenase 1 [Arabidopsis thaliana]
GI:4530591 GB:AF132475; annotation updated per Seth J.
Davis at University of Wisconsin-Madison
Length = 282
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 260 SNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPS 385
S++S+ + +LSR+QF+ +P R Q +S + + SPS
Sbjct: 9 SSLSIFKNPQLSRFQFSSSSPNPLFLRPRIQILSMTMNKSPS 50
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +3
Query: 510 PAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
P P PVY P P PV+ P P P PV P
Sbjct: 510 PPPPPVYSPPPPPPVYSPPPPPPVYSPPPPP-PVHSP 545
>At1g52030.2 68414.m05870 myrosinase-binding protein, putative
(F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
protein-like f-AtMBP [Arabidopsis thaliana]; similar to
myrosinase binding protein GI:1711295 from [Brassica
napus]; contains Pfam PF01419: Jacalin-like lectin
domain; identical to cDNA myrosinase-binding
protein-like protein (MBP1.2) GI:6760446
Length = 642
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +3
Query: 510 PAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
PAP P P P P P P P P P
Sbjct: 293 PAPTPAPAPAPAPAPAPAPSPAPASAPVPAPAPTPAP 329
>At1g52030.1 68414.m05869 myrosinase-binding protein, putative
(F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
protein-like f-AtMBP [Arabidopsis thaliana]; similar to
myrosinase binding protein GI:1711295 from [Brassica
napus]; contains Pfam PF01419: Jacalin-like lectin
domain; identical to cDNA myrosinase-binding
protein-like protein (MBP1.2) GI:6760446
Length = 642
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +3
Query: 510 PAPYPVYKEVQVPVKVHVDRPYPVHIPKPVPYPVEKP 620
PAP P P P P P P P P P
Sbjct: 293 PAPTPAPAPAPAPAPAPAPSPAPASAPVPAPAPTPAP 329
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,531,204
Number of Sequences: 28952
Number of extensions: 253267
Number of successful extensions: 1149
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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