Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1046
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   5.5  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    26   5.5  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   9.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   9.5  

>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +3

Query: 51  TYLYLRLNMHKY--YVKHLIVSIERF 122
           +Y+Y  +++ K   Y KHLI+S+ERF
Sbjct: 690 SYIYPHISVLKKFTYGKHLIMSVERF 715


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 484 KVNKYPQRVRPQLARGQSQLHKKQVFIKYRCTM 582
           K+ KY ++VR   A GQ+ + K  V + Y  T+
Sbjct: 6   KMQKYDRQVRLWKAEGQNAIEKSHVCLLYANTV 38


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +1

Query: 79  TSIM*NTSLFLLKGLVVRRRHTLHKMNIDTFDTNK---MNTLTNIKRSKNGIRVTQNVFI 249
           TS+     LF     +  R  +  K N    + NK   +N L N   ++NG + TQN  +
Sbjct: 222 TSLFKKGFLFKKNNAMQNRTTSNIKSNASAIEKNKETILNALNNSTLNENGHQDTQNEVL 281

Query: 250 NQLI 261
             ++
Sbjct: 282 RDIV 285


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 175 TNKMNTLTNIKRSKNG-IRVTQNVFINQLIS*KHNPVT 285
           TN +  +T + ++  G +++ Q +FI+ LIS  H P T
Sbjct: 358 TNSLLVMTTLLQAMPGSLKLQQELFISYLISCLHIPST 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,377
Number of Sequences: 5004
Number of extensions: 39826
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)