Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1045
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0441 - 14037497-14038006,14038208-14038369                       28   7.0  
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65...    28   7.0  

>05_03_0441 - 14037497-14038006,14038208-14038369
          Length = 223

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 196 FHLKASYYTRVTDMSISRITSSPPPNTFNTA 288
           FHLK +YY   TD +    T  PPP+  + A
Sbjct: 57  FHLKPTYYNTRTDKNTLISTLLPPPSVTSGA 87


>03_01_0082 +
           653041-653137,653219-653496,653596-653689,653804-653886,
           654027-654247,654395-654533,654628-654710,654824-655036,
           655099-655494,655587-655758,656085-656276,656363-656569,
           656661-656753,656957-657156,657329-657838,658114-658184,
           658322-658963,659057-659207,659425-659665
          Length = 1360

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 145 VAAARIVDTKRTLEYI*VKLVDPRPPNSCSPGDPLVL 35
           V AAR+V + +  + + V  + PR P+  SPGD  VL
Sbjct: 43  VDAARLVASFQVFDGVRVHGIQPRCPDGPSPGDVTVL 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,963,338
Number of Sequences: 37544
Number of extensions: 290745
Number of successful extensions: 1107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)