Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1045
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.33 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   7.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 85  VDPRPPNSCSPGDPLVLERPPPR 17
           V PR P    PGD  + +RP PR
Sbjct: 911 VTPRSPGRAWPGDSDIRQRPIPR 933


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 564 ESAVLIGAVLNSPDGTIGLCRL 499
           +S  L+G VL   DGT  LCR+
Sbjct: 48  DSENLLGRVLAEFDGTTVLCRV 69


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 440 TGDNKYQHETRDGDVVKGVYSLHKPMVPSGLLSTAPISTADST 568
           TG  +  HE++   + K    L KP++ S   +T+P+++  ST
Sbjct: 301 TGGPRKSHESQCPMLQK----LEKPVLSSSTTTTSPMTSTKST 339


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 115 F*YPLFWPQPRLDLKRAMAMDT-TTGMRF 198
           F +  FW  PRL  K+   ++T + G  F
Sbjct: 61  FYFRQFWTDPRLAFKKRTGVETLSVGSEF 89


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 115 F*YPLFWPQPRLDLKRAMAMDT-TTGMRF 198
           F +  FW  PRL  K+   ++T + G  F
Sbjct: 61  FYFRQFWTDPRLAFKKRTGVETLSVGSEF 89


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +1

Query: 130 FWPQPRLDLKRAMAMDT-TTGMRF 198
           FW  PRL  K+   ++T + G  F
Sbjct: 5   FWTDPRLAFKKRTGVETLSVGSEF 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,482
Number of Sequences: 438
Number of extensions: 2874
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)