Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1045
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75750.1 68414.m08798 gibberellin-regulated protein 1 (GASA1)...    30   1.5  
At5g07260.1 68418.m00828 homeobox protein-related contains weak ...    29   4.4  
At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   5.9  

>At1g75750.1 68414.m08798 gibberellin-regulated protein 1 (GASA1) /
           gibberellin-responsive protein 1 identical to SP|P46689
           Gibberellin-regulated protein 1 precursor {Arabidopsis
           thaliana}; supporting cDNA
           gi|887938|gb|U11766.1|ATU11766
          Length = 98

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 539 YSTVLTVPSACADCTRPSRRHRHGSRA-GTCCRRC 438
           Y+  +   SAC    R SRR R   RA GTCC RC
Sbjct: 34  YAKKIDCGSACVARCRLSRRPRLCHRACGTCCYRC 68


>At5g07260.1 68418.m00828 homeobox protein-related contains weak
           similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
           [Arabidopsis thaliana]
          Length = 541

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 503 DCTRPSRRHR-HGSRAGTCCRRCEDPLLCTQRR 408
           D  R   R R H   + + CR CE+P++ T+ R
Sbjct: 16  DLLRAENRARIHAMTSPSICRSCEEPIISTEER 48


>At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein contains Pfam domain PF03171 2OG-Fe(II)
           oxygenase superfamily
          Length = 394

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 482 RHRHGSRAGTCCRRCEDPLLC 420
           RHRHG+RA TC  R    L C
Sbjct: 325 RHRHGARATTCGHRVNMLLWC 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,229,066
Number of Sequences: 28952
Number of extensions: 212898
Number of successful extensions: 762
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)