Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1042
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    32   0.086
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   1.9  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   1.9  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   7.5  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   7.5  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   7.5  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   9.9  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   9.9  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   9.9  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   9.9  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 31.9 bits (69), Expect = 0.086
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = +3

Query: 306 SLIVNGFKYNQVD--------DHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYA 449
           +L   GF YN +         D+V C  C     +W +D+     H+T SP C +A
Sbjct: 43  TLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDDPLKEHITHSPSCPWA 98



 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +3

Query: 309 LIVNGFKYN---QVDDHVVCEYCEAEIKNWSEDE 401
           +  +GF YN      D   C YC+  + +W  D+
Sbjct: 144 MAASGFVYNPTADAKDAAHCLYCDINLHDWEPDD 177


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -2

Query: 541 ASVHTLGSAFFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSSSDQFFISASQY 362
           AS  + G +F + T L+V  S  +  + ++    Q    + C Y +H+SS  + I  + Y
Sbjct: 703 ASNSSFGRSFPSCTVLVVN-SELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASY 761


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 1/134 (0%)
 Frame = +1

Query: 178 PPFYFINTRDNFRDNIAEHVFDMLLEDMARLKIIPL*TRRLSTA*SLTGL-NTIKSTITL 354
           P +  +N   +      E ++ M+ +++  L+ +P          ++ GL  T+  T TL
Sbjct: 490 PKYDPVNPEKHITKVTVESLYLMMGQELVYLETVPA-----GNVFAIGGLAGTVLRTATL 544

Query: 355 CASIVKQK*KIGPKTSVLNMHT*PYRRIARMPTRLLSMNRLATTSPSTLY**RRQTQVCV 534
           C+S        GP    +     P  R+A  P R   MN+L T           Q   CV
Sbjct: 545 CSS------PNGPNLVGVTQQMEPIVRVALEPVRPFEMNKLVTGLDML-----NQADPCV 593

Query: 535 QMHVQFTVAYGYVC 576
           Q+ V+    +  +C
Sbjct: 594 QIAVEENGEHVIMC 607


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 670 KHTVSSSATRVKKSRFRNVYNHVTQCGRPKINKRIHTRL*IGHASVHTLGSAFFT 506
           K+ + +  T++K   F   YN  T+   PKI+++ H+ L I   +     S  F+
Sbjct: 36  KNYLLNGRTKLKLENF--AYNASTEISSPKISEKKHSSLPIKRKNTFNESSTSFS 88


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +3

Query: 330 YNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLV 509
           ++ + D +  E  E  ++ + E E I+Y     S + AY N I+      + + I+  L 
Sbjct: 504 FSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTN-ISNAMKAVNGLPIHP-LF 561

Query: 510 KKADPSVCTDAC 545
           KK+      D C
Sbjct: 562 KKSKIRYAPDRC 573


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 24  FVVLEHNLSIVHVINAETKTKLGHINVSLNQNDPNVL 134
           FVVL+ N SI+HV   +  TK+    +S++    ++L
Sbjct: 689 FVVLD-NKSIIHVYAGDLTTKIPSAQLSIDNTSRSLL 724


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 591 AGQKLTNVSIRDCKLDMHLYTHLGLP 514
           AG+  T+VS  +C++D H+    G+P
Sbjct: 10  AGKSDTSVSSLECEIDYHIEGSDGIP 35


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 669 NIQFRPPRPV*KSPASAMFIIMSRNAAGQKL 577
           +IQ  PP+P+ K PA+A       NA G  L
Sbjct: 352 SIQIPPPKPMQKFPANAASSESPPNATGNFL 382


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +3

Query: 348 HVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHE 470
           H +C  C   +   SED   + ++  +SP C+   +  + E
Sbjct: 764 HFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDTE 804


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 297 FINSLIVNGFKYNQVDDHVVCEYCEAEI 380
           FIN++   G    ++  HVV + CE E+
Sbjct: 901 FINNIHYEGENTKKISVHVVSQRCEDEV 928


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,326
Number of Sequences: 5004
Number of extensions: 53421
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)