Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1042
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0969 - 29787617-29787919,29788019-29788180,29788962-297890... 31 0.84
04_03_0632 + 18200844-18200970,18201134-18201190,18201370-182014... 31 1.1
05_04_0402 - 20991628-20991755,20992461-20992578,20992670-209927... 29 3.4
02_05_1280 - 35434165-35434392,35434639-35434800,35435241-354353... 29 4.5
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483... 28 5.9
01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816... 28 5.9
11_02_0146 + 8779249-8780130,8780815-8780970,8781070-8781265,878... 28 7.8
05_04_0366 - 20663243-20663388,20663467-20663572,20664275-206643... 28 7.8
01_06_1567 + 38293612-38293795,38294467-38294523,38294609-382946... 28 7.8
>04_04_0969 -
29787617-29787919,29788019-29788180,29788962-29789093,
29789708-29789760,29790518-29791007
Length = 379
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = -2
Query: 526 LGSAFFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSS 395
LGS+ + T ++ + PN+ ++ ++A++Q G + TC S + +
Sbjct: 163 LGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGA 206
>04_03_0632 +
18200844-18200970,18201134-18201190,18201370-18201460,
18201545-18201705,18202176-18202303,18202386-18202523,
18202966-18203058,18203546-18203704
Length = 317
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 410 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 324
FNT V P++Y FTIL +I ++I++K
Sbjct: 239 FNTAVVSPVYYVMFTIL--TIIANMIMYK 265
>05_04_0402 -
20991628-20991755,20992461-20992578,20992670-20992762,
20992841-20992978,20993070-20993197,20993270-20993430,
20993548-20993638,20993731-20993787,20993986-20994139
Length = 355
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 410 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAV 303
FNT V PI+Y FT L ++ I+FK + Q++
Sbjct: 248 FNTAVVSPIYYAMFTSL--TILASAIMFKDWSGQSI 281
>02_05_1280 -
35434165-35434392,35434639-35434800,35435241-35435372,
35436048-35436115,35436719-35437313
Length = 394
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/62 (22%), Positives = 34/62 (54%)
Frame = -2
Query: 592 GRPKINKRIHTRL*IGHASVHTLGSAFFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCA 413
GRP + ++ +G + ++G+ F T ++++SP + +A +++++Q G + C
Sbjct: 184 GRPPGSGKMQQLASLGKWFLGSVGTGF---TPHVIIISPGEDVAARIMSFSQQGPRAVCI 240
Query: 412 YS 407
S
Sbjct: 241 IS 242
>11_01_0607 -
4837257-4837447,4837526-4837631,4837913-4838005,
4838405-4838542,4838651-4838778,4838889-4839049,
4839145-4839235,4841437-4841602
Length = 357
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 410 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 324
FNT V PI+Y FT L ++ +I+FK
Sbjct: 233 FNTAVVSPIYYVMFTSL--TILASVIMFK 259
>01_06_1512 +
37881055-37881229,37881388-37881444,37881537-37881627,
37881759-37881919,37882002-37882129,37882215-37882352,
37882665-37882757,37882858-37882975,37883064-37883194
Length = 363
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 410 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVDK 297
FN V PI+Y FT L ++ I+FK + Q+ K
Sbjct: 255 FNAAVVSPIYYAMFTTL--TILASAIMFKDWSGQSASK 290
>11_02_0146 +
8779249-8780130,8780815-8780970,8781070-8781265,
8781574-8781599
Length = 419
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -3
Query: 609 IMSRNAAGQKLTNVSIRDCKLDMHLYTHLGLPSLL 505
I+ + Q + ++SI C +++ TH+ PSL+
Sbjct: 176 ILVQKILSQSVRSLSITQCNFELNTRTHISAPSLI 210
>05_04_0366 -
20663243-20663388,20663467-20663572,20664275-20664367,
20664520-20664657,20664759-20664886,20664996-20665156,
20665277-20665367,20665460-20665516,20666288-20666444
Length = 358
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 410 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 324
FNT V PI+Y FT L ++ +I+FK
Sbjct: 249 FNTAVVSPIYYTMFTSL--TILASVIMFK 275
>01_06_1567 +
38293612-38293795,38294467-38294523,38294609-38294699,
38294799-38294959,38295045-38295172,38295291-38295428,
38295717-38295809,38298219-38298324,38298393-38298517
Length = 360
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 410 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 324
FNT V PI+Y FT L ++ +I+FK
Sbjct: 258 FNTAVVSPIYYTMFTSL--TILASVIMFK 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,848,208
Number of Sequences: 37544
Number of extensions: 320726
Number of successful extensions: 774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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