Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1042
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)                   34   0.12 
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   33   0.28 
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)                       29   3.4  
SB_38346| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-20)                 29   4.5  
SB_4631| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                28   6.0  
SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)
          Length = 314

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 264 SFENYPIVNTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYC 440
           +F  +P  ++A +  L   GF +   DD V C  C+  +K W  D+    +H    P C
Sbjct: 141 TFNFWPATSSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDRPIESHREFYPDC 199



 Score = 31.9 bits (69), Expect = 0.48
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 557 SRMDTFVNFWPAALRDMIINIAEAGLFYTGR 649
           +R+ TF NFWPA     +  +A AG  +TGR
Sbjct: 137 ARVRTF-NFWPATSSANVFELARAGFVFTGR 166


>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 321 GFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYC 440
           GF Y    D V C  C   ++NW  D+     H   SP+C
Sbjct: 156 GFYYLGDQDSVKCYKCGVALRNWEPDDLPWVEHEKWSPHC 195


>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
          Length = 603

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 413 IFNTLVFGPIFYFCFTILAHNVIVDLIVFK 324
           IFNT +  PI+Y  FT+L   +I   I+FK
Sbjct: 485 IFNTSLVTPIYYVMFTLL--TIIASAILFK 512


>SB_38346| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-20)
          Length = 340

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 547 GHASVHTLGSAFFTSTALMVMLSPNDSCSAILLAYAQYGDKVT 419
           G A VH LG+   T++A+ V+    D C AI    + Y  +VT
Sbjct: 107 GGAVVHVLGNMLLTTSAMHVLFLSLDRCVAITWPLS-YNTRVT 148


>SB_4631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 623 PQCL*SCHAMRQAKN*QTYPYATVNW 546
           P+CL +CH   QA N QT     V W
Sbjct: 28  PECLANCHKSIQANNVQTLDVLGVTW 53


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 75  TKTKLGHINVSLNQNDPNVLILTVTL 152
           TKT L  +     +NDPNVL +TV L
Sbjct: 760 TKTALSTVQCCSLENDPNVLAITVIL 785


>SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 541 ASVHTLGSAFFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSSSDQ 386
           A +  +  A + +TA  V  SP ++CS      +QY +K+T   S+ +  D+
Sbjct: 534 ADMPRMPCAVYENTARRVTGSPGNNCSLAAKPSSQYTEKLTDRESLTTRQDK 585


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,216,237
Number of Sequences: 59808
Number of extensions: 396477
Number of successful extensions: 1106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)