Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1042
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical p...    28   6.9  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    27   9.2  

>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
           protein F46H5.4 protein.
          Length = 2018

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = +3

Query: 264 SFENYPIVNTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCA 443
           + EN P  N  F + +   G K +  D + +C    +E++  +     +  +  L    A
Sbjct: 494 NIENMPSCNLKFSSFIRQEGDKTSDEDIYRIC----SEMRRTNGKVHKKMFNFELELTLA 549

Query: 444 YANKIAEHESFGDNITINA 500
            +NK  E++S G N+T+N+
Sbjct: 550 GSNKSKEYQSHGSNLTLNS 568


>Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical
           protein C07A9.9 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = +3

Query: 327 KYNQVDDHVV----CEYCEAEIKNWSEDECIEYAHVTLSPYCAY 446
           +Y  VDD V     C +C      W  D+C +  H +L  +C Y
Sbjct: 59  EYQYVDDDVPNSERCHFCMKRKGRWMGDDCSD--HSSLCKHCCY 100


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 42   NLSIVHVINAETKTKLGHINVSLNQNDPNV 131
            ++ I+HVIN     K  H+  SLN ++ N+
Sbjct: 1872 SVEIIHVINVHDLDKSDHLKFSLNNSNLNL 1901


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,097,859
Number of Sequences: 27780
Number of extensions: 305662
Number of successful extensions: 872
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)