Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1042
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.50 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.6  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      22   4.6  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   8.1  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   8.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 529 CVQMHVQFTVAYGYV 573
           CV ++VQF+V YG+V
Sbjct: 696 CVPINVQFSVLYGFV 710


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 17/75 (22%), Positives = 29/75 (38%)
 Frame = -2

Query: 514 FFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSSSDQFFISASQYXXXXXXXX* 335
           F+T   ++  +  +  C  +    A+ G+KVT   SI  S   F +  S+          
Sbjct: 235 FYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLP 294

Query: 334 LYLNPLTIKLLINAV 290
           L    L    ++N V
Sbjct: 295 LIAKYLLFTFIMNTV 309


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +1

Query: 178 PPFYFINTRDNFRDNIAEHVFDMLLEDMARLK 273
           PP Y +     F D + +  +++ + D A +K
Sbjct: 158 PPMYEVMPHLYFNDEVMQKAYNIAMGDTADMK 189


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +1

Query: 178 PPFYFINTRDNFRDNIAEHVFDMLLEDMARLK 273
           PP Y +     F D + +  +++ + D A +K
Sbjct: 158 PPMYEVMPHLYFNDEVMQKAYNIAMGDTADMK 189


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 291 CLQWDNFQTS 262
           CL+W+N+Q+S
Sbjct: 8   CLRWNNYQSS 17


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 291 CLQWDNFQTS 262
           CL+W+N+Q+S
Sbjct: 8   CLRWNNYQSS 17


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/32 (21%), Positives = 18/32 (56%)
 Frame = +1

Query: 184 FYFINTRDNFRDNIAEHVFDMLLEDMARLKII 279
           F  ++   NF++NI + +  + L++    K++
Sbjct: 70  FNIVDESGNFKENIVQELTSIYLDENVIKKLV 101


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/32 (21%), Positives = 18/32 (56%)
 Frame = +1

Query: 184 FYFINTRDNFRDNIAEHVFDMLLEDMARLKII 279
           F  ++   NF++NI + +  + L++    K++
Sbjct: 70  FNIVDESGNFKENIVQELTSIYLDENVIKKLV 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,593
Number of Sequences: 438
Number of extensions: 3624
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)