Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1042
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    33   0.23 
At4g38730.1 68417.m05486 expressed protein                             30   1.6  
At4g09640.1 68417.m01584 expressed protein several hypothetical ...    29   3.7  
At3g23870.1 68416.m03000 permease-related low similarity to puri...    28   4.9  
At1g34470.1 68414.m04283 permease-related low similarity to puri...    28   4.9  
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ...    28   6.5  
At1g71900.1 68414.m08312 expressed protein                             28   6.5  
At4g13800.1 68417.m02139 permease-related contains 9 predicted t...    27   8.6  
At2g04235.1 68415.m00411 expressed protein weak similarity to ne...    27   8.6  

>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +3

Query: 342 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVKKAD 521
           D++++C+ C   I   +   C++     L   CA A++  +H   G  +T+    V+  D
Sbjct: 388 DENIICQACILPIYEGNYYSCMDQCDFVLHEACANASRKKDHALHGHPLTLK---VQGED 444

Query: 522 PSVCTDAC 545
              C+  C
Sbjct: 445 SFFCSACC 452


>At4g38730.1 68417.m05486 expressed protein
          Length = 326

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 410 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVD 300
           FN  +  PI+Y  FT L   ++   I+FK  N Q  D
Sbjct: 237 FNAAIVSPIYYVMFTTL--TIVASAIMFKDWNGQNTD 271


>At4g09640.1 68417.m01584 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 386

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 410 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQA 306
           FNT V  PI+Y  FT L   ++  +I+FK  + Q+
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFKDWDRQS 283


>At3g23870.1 68416.m03000 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007; contains 9
           predicted transmembrane domains; contains Pfam PF05653:
           Protein of unknown function (DUF803); identified as
           COG0697, Permeases of the drug/metabolite transporter
           (DMT) superfamily
          Length = 335

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 410 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 324
           FNT V  P++Y  FT     +I  +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTIIASMIMFK 266


>At1g34470.1 68414.m04283 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007
          Length = 368

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 410 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 324
           FNT V  PI+Y  FT L   ++  +I+FK
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFK 277


>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/54 (20%), Positives = 26/54 (48%)
 Frame = +3

Query: 342 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAV 503
           +++++C+ C   I   +   C++  +  L   CA A++  +H      +T+  V
Sbjct: 388 NENIICQACILPIYEGNYYSCMDQCNFILHEACANASRKKDHALHSHPLTLKVV 441


>At1g71900.1 68414.m08312 expressed protein
          Length = 343

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 410 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 324
           FNT +  PI+Y  FT L   ++  +I+FK
Sbjct: 251 FNTAIVSPIYYVMFTSL--TILASVIMFK 277


>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 410 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 324
           FNT V  P++Y  FT     ++  +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTILASMIMFK 266


>At2g04235.1 68415.m00411 expressed protein weak similarity to
            neurofilament protein (GI:161292) [Loligo pealei]; weak
            similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
            (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
            glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
            cerevisiae]
          Length = 1226

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 491  HQRCTSKEGRPKCVYRCMSNLQSRMDTFVNFWPAALRDMIINIAEAGLF 637
            +QR T K G P CV   +SN  S  DTFV  +P    +M ++IA   +F
Sbjct: 1039 NQRLTLKPGHPSCV--LVSN--SLSDTFVKHFP----EMNVSIAFNSMF 1079


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,826,748
Number of Sequences: 28952
Number of extensions: 269004
Number of successful extensions: 600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)