Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1041
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    26   0.31 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   2.2  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.7  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   8.9  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   8.9  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 174 KLAGRYYIHNCFLKFWINNKNKASKRSIMLYAWCVLACVT 293
           +LA +  +    +K W  N+    KR  M  AW   A  T
Sbjct: 103 ELAAQLNLPESTIKVWFQNRRMKDKRQRMAIAWPYAAVYT 142


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 513 FLLHVPSSQHQQTRRPVV*QCPHCYLLSRRPLRTDAGEFHARS 385
           F LHV  S H  T + +      CY+ S    R D GE+H ++
Sbjct: 12  FCLHVQHS-HGATDKVI------CYVASWAIYRPDKGEYHPKN 47


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 121 LKDNITNSFAGFYNSHNTKY 62
           + D +TN   G YN  N K+
Sbjct: 445 IADPVTNEIKGVYNMTNLKF 464


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 647 KDGQIEEEIHQESSRKWSE 591
           K  +++EEI  E   KW +
Sbjct: 213 KKKEVKEEIEDEPDHKWKK 231


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 40  LLAAVELCISYCAN 81
           +L+ V+ C+SYC N
Sbjct: 276 VLSIVKNCLSYCFN 289


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 40  LLAAVELCISYCAN 81
           +L+ V+ C+SYC N
Sbjct: 276 VLSIVKNCLSYCFN 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,484
Number of Sequences: 336
Number of extensions: 3514
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)