Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1041
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce...    29   0.59 
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.1  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   4.1  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.5  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   9.5  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   9.5  

>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 246 KRSIMLYAWCVLACVTAADAL 308
           +R +M Y WCV  CVTAA+++
Sbjct: 100 RRRLMAY-WCVYGCVTAAESI 119


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 249 SSKLCSCYLSKTSENNYVCNNVPLISHFTAKTTFTNRQRKQQH*KTTSPTVL 94
           SS  C   LS++S NN V        +F  +    N  +  QH  T+ P+VL
Sbjct: 19  SSNFCFRNLSQSSNNN-VSYASSSNRNFVPQNVLNNEYQSFQHSSTSQPSVL 69


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
 Frame = -2

Query: 545 QSASAAVLLPLSYSMSHHR--SINRHEDQSFNSV---PTVIFYHEGP*ELTQVNS 396
           +SA+  V  P+ YS S  +  S  +H++QSF++    P++ + +  P   + +N+
Sbjct: 248 ESANPPVQSPMQYSYSQGQPFSYPQHKNQSFSASPIDPSMSYVYRAPESFSSINA 302


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +3

Query: 177 LAGRYYIHNCFLKFWINNKNKASKRSIMLYAWCVLACVTAADALRVGAGIADVTG 341
           L GR+  H+ FLK+    +     R   L +  V+A   + +A+ +   + D  G
Sbjct: 388 LLGRHLAHSNFLKYTAETELTDKSRWTRLDSIAVVALCNSLNAVGIAESVMDPFG 442


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 285 TQARTTRITLYFSSKLCSCYLSKTSENNYVCNNVP 181
           T+AR   + ++   KLC+  L    EN+    N P
Sbjct: 209 TKARQLNMKIWSMEKLCNRVLKTLMENDQCTTNAP 243


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 646 RMGRSKRKSIRNPPGSGVSVGAADDHIILVVDYAKALLQPSYYLFP 509
           +M R+ +    +P G+ VS+ + D   IL V+    +LQ SY+  P
Sbjct: 637 QMPRTLKAIALDPQGNYVSLFSKDTLFILNVESPCLMLQHSYHCKP 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,029
Number of Sequences: 5004
Number of extensions: 55926
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)