Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1041
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0752 - 24909954-24910502,24914620-24914786,24914916-249149... 71 1e-12
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834... 34 0.11
05_04_0224 - 19198722-19198835,19198947-19199436,19200478-192006... 31 1.1
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050... 29 2.4
03_05_0284 - 22712390-22712899,22712978-22713304,22713742-227140... 29 2.4
04_04_1286 + 32387687-32387908,32388046-32389494 29 3.2
06_02_0061 - 11043183-11043417,11043556-11043796,11043923-110441... 29 4.3
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 29 4.3
04_01_0139 + 1560962-1561094,1561205-1561416,1561481-1561706,156... 28 5.6
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982... 27 9.9
05_05_0112 - 22480639-22480905,22480991-22481287,22481707-224818... 27 9.9
>01_05_0752 -
24909954-24910502,24914620-24914786,24914916-24914979,
24915472-24915597,24915673-24915943,24916032-24916287,
24916386-24916754,24916850-24916891,24917474-24917682,
24918074-24918109,24918509-24918918,24919314-24919438,
24920267-24920333,24921596-24921652
Length = 915
Score = 70.5 bits (165), Expect = 1e-12
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +3
Query: 258 MLYAWCVLAC--VTAADALRVGAGIADVTGPPAEIAFMGYAQLEQIGHGIHLRQFSRAFV 431
+L A +L C V +A VG G D+TGP A++ MGYA EQI GIH R SRAF+
Sbjct: 127 LLLALVLLNCSLVLSASPYLVGMGSFDITGPAADVNMMGYANTEQIASGIHFRLKSRAFI 186
Query: 432 IEDNSGDTVKRLVFVSVDAAM 494
+ + +G KR+VFV++DA M
Sbjct: 187 VAEPNG---KRVVFVNIDACM 204
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 542 FGVIYNEDNVIISGTHTHS 598
+G +YNE+NV ISG HTH+
Sbjct: 233 YGDLYNENNVAISGIHTHA 251
>05_04_0098 +
17982196-17982355,17982761-17982978,17983232-17983418,
17983957-17984057,17984708-17984885,17984956-17985233
Length = 373
Score = 33.9 bits (74), Expect = 0.11
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Frame = -1
Query: 423 PLRTDAGEFHARSARVEHIP*KQFQPVGQ*RQLCQPRHAAHPPPSRTQARTTRITLYFSS 244
P +AG + A SARV+ IP +PV L + P PS + R R +
Sbjct: 213 PSVDNAGTYEATSARVDIIPLFLDRPVN--LHLDENDLEISPSPSDHKRRDHRNSAIRVQ 270
Query: 243 KLCSCYLSKTS-ENNYVCNNVPLISHFTAKTTFTNRQRKQQH*KTTSPTVLPGFTIRTIR 67
+ + +++S E +Y N + IS AK +R+ + + KT + R R
Sbjct: 271 HIRTGVTAESSGERSYFANKMKAISRLKAKLLVISRELRSSNLKTIKRQTVEELYSRETR 330
Query: 66 NTKF 55
KF
Sbjct: 331 RYKF 334
>05_04_0224 -
19198722-19198835,19198947-19199436,19200478-19200641,
19202534-19202632,19204069-19204175,19204278-19204401,
19205113-19205242,19205314-19205433,19205861-19206002,
19207243-19207326,19207651-19207742,19207855-19207944,
19208057-19208136,19208312-19208451,19208587-19209067
Length = 818
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/98 (27%), Positives = 43/98 (43%)
Frame = +3
Query: 207 FLKFWINNKNKASKRSIMLYAWCVLACVTAADALRVGAGIADVTGPPAEIAFMGYAQLEQ 386
F I K SK+ L A+ L VT + G +TGPP E F+ + Q +
Sbjct: 524 FTSVLIIKKRAISKKLQSLQAYSRLDAVTLIIVNNLQYGAPALTGPPPE--FVDHQQARK 581
Query: 387 IGHGIHLRQFSRAFVIEDNSGDTVKRLVFVSVDAAMMG 500
+ + ++L + + V + D +RLV + DA G
Sbjct: 582 VKNDVNLHKDTIRLVPDVTDPD--RRLVAFTFDAVTDG 617
>04_04_0161 +
23203786-23203848,23204141-23204180,23204865-23205016,
23205270-23205406,23206356-23206396,23206500-23207098,
23207599-23207679,23208146-23208208,23209141-23209197
Length = 410
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -2
Query: 422 P*ELTQVNSMPDLLELSISHKSNFSRWASDVSYASPDTQRIRRR 291
P + SM DLL+L S ++ +S W+ ++ + SP+ + RR
Sbjct: 230 PSRIPSARSMDDLLKLDSSREA-YSSWSGNLRHRSPEKLKSARR 272
>03_05_0284 -
22712390-22712899,22712978-22713304,22713742-22714091,
22714176-22714401,22714655-22714728,22715813-22716152
Length = 608
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 500 TWSRK-EVIRRLQKRFGVIYNEDNVIISGTHTH 595
TW +K + I RL+K G I++E+N IIS H
Sbjct: 401 TWHKKFQKISRLRKVSGAIWDEENFIISLDEEH 433
>04_04_1286 + 32387687-32387908,32388046-32389494
Length = 556
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 511 PTPCPIIAASTDTKTSRLTVSPLL 440
P P P++ STD+ S T SPLL
Sbjct: 49 PDPDPVVLPSTDSSRSAATTSPLL 72
>06_02_0061 -
11043183-11043417,11043556-11043796,11043923-11044106,
11044228-11044437,11045135-11045423,11045787-11045923,
11046019-11046137,11046405-11046518,11046710-11046803
Length = 540
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 231 KNKASKRSIMLYAWCVLACV 290
K K K SI L AWC+L C+
Sbjct: 354 KGKCKKLSIKLPAWCILQCL 373
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 649 PRMGRSKRKSIRNPPGSGVSVGAA 578
PR RSK K + PPG+G + A+
Sbjct: 6 PRKSRSKAKGVGKPPGAGAASAAS 29
>04_01_0139 +
1560962-1561094,1561205-1561416,1561481-1561706,
1561782-1562029,1562374-1562392,1562747-1562886,
1563134-1563361
Length = 401
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 500 TWSRK-EVIRRLQKRFGVIYNEDNVIISGTHTH 595
TW RK I L+K ++++DN IIS H H
Sbjct: 288 TWKRKYSKIADLRKLSAALWDDDNFIISLDHKH 320
>05_07_0305 -
29097478-29097598,29097766-29097866,29098136-29098288,
29098404-29098542,29098649-29098719,29099022-29099333,
29099605-29099903,29100011-29100271,29100365-29100471,
29100588-29100739,29100816-29100970,29102946-29103141,
29103340-29103468,29103540-29103641,29103736-29103889,
29103970-29104058
Length = 846
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 529 PSYYLFPTPCPIIAASTDTKTSRLTVSPLLSSITKALEN 413
PSY L P C + +S T+ R ++ L S+T E+
Sbjct: 267 PSYCLLPKNCVTLQSSYQTELGRSILNDSLVSVTSGRED 305
>05_05_0112 -
22480639-22480905,22480991-22481287,22481707-22481836,
22482167-22482492,22482609-22482830,22483372-22483684,
22483795-22483850
Length = 536
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 390 GHGIHLRQFSRAFVIEDNSGDTVKRLVFVSVDAAMMGHGVG 512
G GI L Q RA+ ++D+ DTV+ V + + +G+G
Sbjct: 406 GRGIGLGQKLRAYNLQDDGHDTVQANVELGLAVDSREYGIG 446
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,895,964
Number of Sequences: 37544
Number of extensions: 412253
Number of successful extensions: 1297
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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