Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1041
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_20266| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8)            29   2.5  
SB_6719| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)         29   4.4  
SB_25506| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)                 28   5.8  
SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)                   28   5.8  
SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)      28   5.8  
SB_45278| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_38759| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_19687| Best HMM Match : Transgly_assoc (HMM E-Value=5.6)            28   7.6  
SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)                28   7.6  

>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 534 CSRLITSFLLHVPSSQHQQTRRPVV*QCPHCYLLSRRPLR 415
           CS +       +PSS HQ         CPH Y   RRPL+
Sbjct: 416 CSEMKPRVYRQIPSSDHQDQGHTTCRTCPH-YSTGRRPLK 454


>SB_20266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 147 TNRQRKQQH*KTTSPTVLPGFTIRTIRNTKFNSR 46
           T R R Q+H +TT P V+P  T+R  R  + N R
Sbjct: 88  TQRPRAQKHVRTTHPVVIPPPTVRE-RTKRINPR 120


>SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8)
          Length = 201

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 534 CSRLITSFLLHVPSSQHQQTRRPVV*QCPHCYLLSRRPLR 415
           CS +       +PS  HQ        +CPH Y   RRPL+
Sbjct: 119 CSEMKPRVYRQIPSFDHQDQGHTTCRRCPH-YSTGRRPLK 157


>SB_6719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +3

Query: 345 PAEIAFMGYAQLEQIGHGIHLRQFSRAFVIEDNSGDTVKRLVFVSVDAAMMGHGVG 512
           P  + F    QL       HLR F+R    E   GD   R+ F    A ++G  +G
Sbjct: 142 PFSLPFYRETQLYSRSSRGHLRIFNRQIDAEGKDGDPYGRVPFAIQAAQLLGRAIG 197


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
 Frame = -1

Query: 291  SRTQARTTRITLYFSSKLCSCYLSKTSENN------YVCNNVPLISHFTAKTTFTNRQRK 130
            S   +R  R +LY + + CS  +S+ ++ +       VC       + TA  T T R  K
Sbjct: 2181 SENVSRKARKSLYLALRKCSENVSRKAQEHCRVAPYMVCTLTKSCRYQTATRTRTVRLSK 2240

Query: 129  QQH*KTTSPTVLPGFTIRTIR 67
              +  +TSPT++     R+ R
Sbjct: 2241 ASNENSTSPTLIYSVNWRSFR 2261


>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
          Length = 609

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 446 TVIFYHEGP*ELTQVNSMPDLLELSISH 363
           TVI  H    +LT + +MP+L+ L +SH
Sbjct: 133 TVILSHNSLTDLTALGNMPNLITLDVSH 160


>SB_25506| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
          Length = 325

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -1

Query: 291 SRTQARTTRITLYFSSKLCSCYLSKTSENNYVCNNVPLISHFTAKTTFTNRQRK 130
           S  +AR++  TLYFS+ L  CY S  +E   + N + +       TT+  R RK
Sbjct: 238 SELEARSS--TLYFSATLEKCYASFAAERRLLVNRMRI-------TTYVMRNRK 282


>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
          Length = 729

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 225 LSKTSENNYVCNNVPLISHFTAKTTFTNRQRKQQH 121
           L  T++++YVCN       F  K + T+R   Q+H
Sbjct: 32  LPTTNQHSYVCNGPENACFFVCKLSKTSRTNDQKH 66


>SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)
          Length = 376

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +3

Query: 255 IMLYAWCVLACVTAADALRVGAGIADVTGPPAEIAFMGYAQLEQIGHG-IHLRQFSRAFV 431
           + +  + V+  +   D   +G G+ ++ G   ++  MGY  +E IG+G + +  +    V
Sbjct: 273 VEMMGYRVVEMIGYGDVEMMGYGVVEMIGY-GDVEMMGYGDVEMIGYGDVEMMGYG---V 328

Query: 432 IEDNSGDTVKRLVFVSVDAAMMGHG 506
           +E      V+ + +  V+  MMG+G
Sbjct: 329 VEMMGYGDVEMMGYGDVE--MMGYG 351


>SB_45278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 183 PLISHFTAKTTFTNRQRKQQH*KTTSPTVLPGFTIRTI 70
           P  SH   K +F N     ++   + PT +PGF  +T+
Sbjct: 9   PPASHANGKVSFVNMNSSSENQYASIPTDVPGFEQQTV 46


>SB_38759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 195 IHNCFLKFWINNKNKASKRSIMLYAWCVLACVTAADALRVGA 320
           IH    K W NNK K    SIM      +  V+ A+ L +GA
Sbjct: 195 IHTNQQKSWFNNKLKEISTSIMQNLLTTMFKVSLAEILELGA 236


>SB_19687| Best HMM Match : Transgly_assoc (HMM E-Value=5.6)
          Length = 159

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 183 PLISHFTAKTTFTNRQRKQQH*KTTSPTVLPGFTIRTI 70
           P  SH   K +F N     ++   + PT +PGF  +T+
Sbjct: 58  PPASHANGKVSFVNMNSSSENQYASIPTDVPGFEQQTV 95


>SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)
          Length = 660

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -1

Query: 321 QPRHAAHPPPSRTQARTTRITLYFSS----KLCSCYLSKTSENNYVC 193
           QP +   PPP   +  T  ++LY  S    K+ SC L +T     +C
Sbjct: 453 QPGYKYRPPPRLDKGHTPNLSLYLQSFFLPKISSC-LYRTDPKGIIC 498


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,217,286
Number of Sequences: 59808
Number of extensions: 443468
Number of successful extensions: 1167
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)