Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1041
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016415-6|AAB65267.1|  283|Caenorhabditis elegans Lysozyme prot...    29   2.2  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AF016415-6|AAB65267.1|  283|Caenorhabditis elegans Lysozyme protein
           7 protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 282 ACVTAADALRVGAGIADVTGPPAEIAFMGYAQLEQIGHGIHLRQFS-RAFVIEDNS 446
           +CVT  +A + G GI     P       GY QL++I  G+  R  + RA  I+  S
Sbjct: 96  SCVTIQNAYKAGLGIEIYMTPQPVSNKQGYQQLDEIIQGLTARAITVRAIWIQVTS 151


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical protein
            C31C9.6 protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
 Frame = -3

Query: 625  KSIRNPPGSGVSVGAADDHI--ILVVDYAKALLQPSYYLFPTPCP----IIAASTDTKTS 464
            K   + P S VS  A  D +  I + D + ++ Q      PTP P    II+AS+    S
Sbjct: 816  KIFSSTPSSPVSNAAIIDGMKNISLSDSSTSVAQDIAMKVPTPLPRTSKIISASSPLPPS 875

Query: 463  RLTVSPLLSSITKALEN*RR*IPCPICS 380
            +  ++PL+  + ++       IP   CS
Sbjct: 876  QDEINPLIEMVDQSSSKSETQIPVTECS 903


>U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical
           protein B0280.2 protein.
          Length = 627

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
 Frame = -3

Query: 625 KSIRNPPGSGVSVGAADDHI--ILVVDYAKALLQPSYYLFPTPCP----IIAASTDTKTS 464
           K   + P S VS  A  D +  I + D + ++ Q      PTP P    II+AS+    S
Sbjct: 478 KIFSSTPSSPVSNAAIIDGMKNISLSDSSTSVAQDIAMKVPTPLPRTSKIISASSPLPPS 537

Query: 463 RLTVSPLLSSITKALEN*RR*IPCPICS 380
           +  ++PL+  + ++       IP   CS
Sbjct: 538 QDEINPLIEMVDQSSSKSETQIPVTECS 565


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical
           protein F55H12.3 protein.
          Length = 2972

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 291 SRTQARTTRITLYFSSKLCS-CYLSKTSENNYVCNNVPLISHFTAKTTFTN 142
           S T  R T   +Y+     S C +S +++  +   ++P+  H+T KT   N
Sbjct: 389 SDTDTRKTEFQIYYQEADASLCNISDSNQLIFNSESIPIPCHYTFKTQHFN 439


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -1

Query: 333  RQLCQPRHAAHPPPSRTQARTTRITLYFSSKLCSCYLSKT--SENNYVCNNVPLISHFTA 160
            R++CQ     HPPP  T         Y  SK+ S    K   ++N +  N   +I   T 
Sbjct: 1323 RKVCQHLGGEHPPPKDTICCEGSNIAYMFSKMLSKNFKKVEGTQNIFYLNPESMIEQKTK 1382

Query: 159  KT 154
            K+
Sbjct: 1383 KS 1384


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -1

Query: 333  RQLCQPRHAAHPPPSRTQARTTRITLYFSSKLCSCYLSKT--SENNYVCNNVPLISHFTA 160
            R++CQ     HPPP  T         Y  SK+ S    K   ++N +  N   +I   T 
Sbjct: 1323 RKVCQHLGGEHPPPKDTICCEGSNIAYMFSKMLSKNFKKVEGTQNIFYLNPESMIEQKTK 1382

Query: 159  KT 154
            K+
Sbjct: 1383 KS 1384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,493,825
Number of Sequences: 27780
Number of extensions: 326029
Number of successful extensions: 997
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)