Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1039
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    30   0.23 
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    29   0.40 
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    27   2.1  
SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit L2...    26   2.8  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   6.5  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   8.5  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   8.5  

>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 15  ILDNNLSFIDIVTLF*CLNKEYNSFSNIEPKFSYYQYSNSMDYINTYYS 161
           +LD + + ID VT    + ++++ F +  P   Y Q+S+   Y  TYYS
Sbjct: 640 VLDPSFNSIDEVTN---VTRKFSGFESAPPAAWYLQFSHLYGYSATYYS 685


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 288 SHNYSHKKPTEAVRRSHYTLLDRYLRPATRMSSDTSRHVATRKLRTQSRLLQQQDHYLFS 467
           +H+  H+      R S +   DR  RP++R + D SRH    K   + + L  ++ Y  S
Sbjct: 23  NHSRRHRHHHSRHRESKHGRHDRSERPSSREAGDRSRHERFSKEPLEVKKLPVENEYFDS 82


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +3

Query: 270 LHNCVISHNYSHKKPTEAVRRSHYTLLDRYLRPATRMSSDTSRHVATRKLRTQSRLLQQQ 449
           +++  I +  + KK  E   R +YT L RYL  + + +S      +    + +   L + 
Sbjct: 349 IYDTDIKNVSTKKKDFEETSRDYYTSLSRYLSKSEKETSSDKTKESKFAAKKRDFELSRF 408

Query: 450 DHYLFSYPI 476
           D+Y +   I
Sbjct: 409 DYYSYMQDI 417


>SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit
           L25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = +3

Query: 282 VISHNYSHKKPTEAVRRSHYTLLDRYLRPATRMSSDTSRHVATRKLRTQSRLLQQQ 449
           VI+  YS+++  E  + +    LD  L        D++RH+    L  + ++ +++
Sbjct: 52  VINPYYSNRRQAEIYKEARLQNLDNLLPQQMSWQKDSTRHILKGLLNPKGKISERK 107


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 388 TLQGTWRHVNYVH 426
           T+Q  WRH+N++H
Sbjct: 54  TMQNWWRHLNWLH 66


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 91  LNELYSLFKH*NNVTISMNDRLLSRI 14
           LN+  SL +H NN+  S N  LL R+
Sbjct: 601 LNDFKSLIQHTNNLLQSNNASLLRRL 626


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 288 SHNYSHKKPTEAVRRSHYTLLDRYLRPAT 374
           ++ Y+ K    A+R  H T  DRY++  T
Sbjct: 485 TNRYASKVVERALRVCHVTFFDRYVKEIT 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,847
Number of Sequences: 5004
Number of extensions: 37559
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)