Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1039
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12)                   29   2.9  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_20701| Best HMM Match : DUF1027 (HMM E-Value=2.4)                   27   6.6  

>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
 Frame = +3

Query: 105 KFSYYQYSNSMDYINTYYSQFAIVC*NS*TIIGR*ATSVNKILLYKFNSIHCVI*LHNCV 284
           ++++Y          T YS + ++     T+     T  +   L   N+ H     H  +
Sbjct: 317 RYAHYTLPTLHATHTTRYSHYTLL-----TLYATHTTRYSHYTLRTLNATHATRYSHYTL 371

Query: 285 ISHNYSHKKPTEAVRRSHYTLLDRYLRPATRMSSDT--SRHVATRKLR 422
           ++ + +H       R SHYTLL  +    TR S +T  + H AT   R
Sbjct: 372 LTQHATH-----TTRYSHYTLLTLHATHTTRYSHNTLLTLHAATHTTR 414


>SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12)
          Length = 434

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 69  NKEYNSFSNIEPKFSYYQYSNSMDYINTYY 158
           N+ +NS S      SYYQY  S+ Y  TYY
Sbjct: 167 NELWNSMSYWYYMQSYYQYYYSISYFYTYY 196


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 372  TRMSSDTSRHVATRKLRTQSRLLQQQDHY 458
            TR+ S+  R +   KLR + R L+Q+D++
Sbjct: 1925 TRLQSERQRQLELAKLRREQRRLKQEDNF 1953


>SB_20701| Best HMM Match : DUF1027 (HMM E-Value=2.4)
          Length = 229

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = +3

Query: 327 RRSHYTLLDRYLRPATRMSSDTSRHVATRK------LRTQSRLLQQQDHYLFSYPIRWTE 488
           RRS+   L  Y +    M+S   R V  +K      +   +R L   + + F+ P++W E
Sbjct: 60  RRSNRRGLCYYPKDVLMMTSGMERAVEHKKRKENQDMAAAARFLNPPEFFDFTKPLKWPE 119

Query: 489 W 491
           W
Sbjct: 120 W 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,484,906
Number of Sequences: 59808
Number of extensions: 275452
Number of successful extensions: 535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)