Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1039
         (505 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-309|AAN13252.1| 1393|Drosophila melanogaster CG31551-PA...    29   4.7  
AE013599-1707|AAM68575.1| 1360|Drosophila melanogaster CG17034-P...    28   6.2  
AE013599-1706|AAM68574.1| 1360|Drosophila melanogaster CG17034-P...    28   6.2  
AE013599-1705|AAF58378.2| 1235|Drosophila melanogaster CG17034-P...    28   6.2  

>AE014297-309|AAN13252.1| 1393|Drosophila melanogaster CG31551-PA
            protein.
          Length = 1393

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = +3

Query: 216  SVNKILLYKFNSIHCVI*LHNCVISHNYSHKKPTEAVRRSHYTLLDRYLRPATRMSSDTS 395
            S++  L YK  ++   +  H   IS     ++   A+RR    L+D+  +  +R  S+  
Sbjct: 1269 SISPDLAYKITNLEDELKAHLKKISRRAFAQRGAGALRRRAKYLMDQQRQLQSRQLSEVC 1328

Query: 396  RHVATRKLRTQSRLLQQQD 452
            R+   + LR   RL    D
Sbjct: 1329 RNSEEQTLRLWDRLTSSSD 1347


>AE013599-1707|AAM68575.1| 1360|Drosophila melanogaster CG17034-PC,
            isoform C protein.
          Length = 1360

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +3

Query: 279  CVISHNYSHKKPTEAVRRSHYTLLDRYLRPATRMSSDTSRHVATRKLRTQSRLLQQQDHY 458
            C + HN   K  TEAVR +     D         SSD+    A  KL   S +L   DH+
Sbjct: 1181 CKLVHNTVFKTLTEAVRETEIRRSDISEVMNEPRSSDSGFGYALGKLIRSSHILISHDHH 1240


>AE013599-1706|AAM68574.1| 1360|Drosophila melanogaster CG17034-PB,
            isoform B protein.
          Length = 1360

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +3

Query: 279  CVISHNYSHKKPTEAVRRSHYTLLDRYLRPATRMSSDTSRHVATRKLRTQSRLLQQQDHY 458
            C + HN   K  TEAVR +     D         SSD+    A  KL   S +L   DH+
Sbjct: 1181 CKLVHNTVFKTLTEAVRETEIRRSDISEVMNEPRSSDSGFGYALGKLIRSSHILISHDHH 1240


>AE013599-1705|AAF58378.2| 1235|Drosophila melanogaster CG17034-PA,
            isoform A protein.
          Length = 1235

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +3

Query: 279  CVISHNYSHKKPTEAVRRSHYTLLDRYLRPATRMSSDTSRHVATRKLRTQSRLLQQQDHY 458
            C + HN   K  TEAVR +     D         SSD+    A  KL   S +L   DH+
Sbjct: 1056 CKLVHNTVFKTLTEAVRETEIRRSDISEVMNEPRSSDSGFGYALGKLIRSSHILISHDHH 1115


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,828,957
Number of Sequences: 53049
Number of extensions: 405125
Number of successful extensions: 878
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1804766976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)