Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1039
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    30   0.77 
At1g32090.1 68414.m03949 early-responsive to dehydration protein...    27   7.2  
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf...    27   9.5  
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf...    27   9.5  

>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 342  TLLDRYLRPATRMSSDTSRHVATRKLRTQSRLLQQQDHY 458
            T+L++YLRPA  ++ + S  +  R +  QS+      HY
Sbjct: 3171 TILEKYLRPAVSLAEEQSSKICKRLVDRQSQTWFHLAHY 3209


>At1g32090.1 68414.m03949 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 806

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +3

Query: 84  SFSNIEPKFSYYQYSNSMDYINTYYSQFAI 173
           S SN++PK S + +  +++YI T+++ F +
Sbjct: 147 SISNVQPKSSKFFFHIAVEYIFTFWACFML 176


>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 698

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 312 PTEAVRRSHYTLLDRYLRPATRMSSDTS 395
           P +A+RRSHY    ++LR + R +S++S
Sbjct: 647 PVKAIRRSHY----KFLRSSCRRTSESS 670


>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 694

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 312 PTEAVRRSHYTLLDRYLRPATRMSSDTS 395
           P +A+RRSHY    ++LR + R +S++S
Sbjct: 643 PVKAIRRSHY----KFLRSSCRRTSESS 666


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,799,791
Number of Sequences: 28952
Number of extensions: 178459
Number of successful extensions: 364
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)