Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1038
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    30   0.34 
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       28   1.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   9.6  

>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 540 DTSPNRYHSVNSVPKPSSVQFER*GSPN 457
           +T P RY+ + S+P P+SV F     PN
Sbjct: 437 NTLPPRYNELGSLPSPNSVSFTEDSRPN 464


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 254 RPVNHLNKRLNLIL*MTPETHKTLCKIEEKYQD 156
           RP + LNK   +IL +  E  KT+C+++   +D
Sbjct: 100 RPPSRLNKIQVMILSLIEEWRKTICRVDRYKED 132


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 527 LGLVSISIAFTTSKPPDRSTLVQHSENGIVY 619
           + L  + IAFT+++PP  S ++    NG  Y
Sbjct: 374 INLEKLQIAFTSNEPPSGSGVLPFLTNGGCY 404


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 606 FSECCTRVLRSGGLLVVKAIEIDTSPNRYHSVNSVPKPSSV 484
           F  CC  V  S   + +   E   S NR HS+   P+P +V
Sbjct: 221 FYSCCI-VFISSYSIFLSVKESKESENRIHSIIGAPQPVTV 260


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 20  ATVLPKMEQLWFEPRHVIREPLEFGESRRCHTLLRR*VEN 139
           A++   M Q + +PR+ + + L+ G +  C   LRR ++N
Sbjct: 426 ASLASIMSQKFTKPRYELEDFLDHGYATMCDAELRRPLKN 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,646
Number of Sequences: 5004
Number of extensions: 49541
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)