Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1038
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1414 + 37167849-37168820,37168909-37168980,37169104-371691...    30   1.4  
05_01_0372 - 2913518-2916562,2916674-2917528                           28   7.5  
02_05_1009 - 33472588-33472711,33472726-33472895                       27   9.9  

>01_06_1414 +
           37167849-37168820,37168909-37168980,37169104-37169133,
           37169276-37169368
          Length = 388

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 6   MDSQQQQYCLKWNSFGS-NLATSFANLWNSESLADVTLYCEGELK 137
           ++  Q   C    +FGS N+    AN+WN+E     T  C+G ++
Sbjct: 50  LEELQNSLCEPGRNFGSMNMDEFVANIWNAEEFQATTGGCKGAME 94


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 275 SLRPTLPRPVNHLNKRLNLIL*MTPETHKTLCKIEEKYQD 156
           SLRPT+PRPV   N      L +T E  + + + E+K  D
Sbjct: 551 SLRPTVPRPVARSNLFSPSELAVTAEPTEEMTEEEKKLHD 590


>02_05_1009 - 33472588-33472711,33472726-33472895
          Length = 97

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 183 LQNRRKVPGLHELKEFSTHLRSRV*HRRDSPNSRGSRMT 67
           L  RR +P     K   T ++ R   +RDS NSRGS+ T
Sbjct: 58  LSARRLIPEKDGAKRLRTSVKER--WKRDSRNSRGSQAT 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,372,741
Number of Sequences: 37544
Number of extensions: 309370
Number of successful extensions: 627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)