Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1038
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              28   5.8  
SB_11029| Best HMM Match : GPS (HMM E-Value=2.2e-07)                   28   5.8  

>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 183  LQNRRKVPGLHELKEFSTHLRSRV*H 106
            +Q R  VPG  +++E   HL+SR+ H
Sbjct: 2304 MQGRESVPGSEDVREEMDHLKSRLDH 2329


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 183 LQNRRKVPGLHELKEFSTHLRSRV*H 106
           +Q R  VPG  +++E   HL+SR+ H
Sbjct: 12  MQGRESVPGSEDVREEMDHLKSRLDH 37


>SB_11029| Best HMM Match : GPS (HMM E-Value=2.2e-07)
          Length = 184

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = +1

Query: 37  NGTALVRT---SPRHSRTSGIRRV 99
           NGT++ RT   SP+ +RT G+RRV
Sbjct: 56  NGTSIKRTFPKSPKQARTQGVRRV 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,200,637
Number of Sequences: 59808
Number of extensions: 365569
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)