Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1038
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      46   4e-07
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      44   1e-06
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          44   1e-06
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 45.6 bits (103), Expect = 4e-07
 Identities = 16/36 (44%), Positives = 26/36 (72%)
 Frame = +3

Query: 21  QQYCLKWNSFGSNLATSFANLWNSESLADVTLYCEG 128
           Q +CL+WN++ S++ ++F NL + E   DVTL C+G
Sbjct: 5   QHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDG 40


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 16/35 (45%), Positives = 25/35 (71%)
 Frame = +3

Query: 21  QQYCLKWNSFGSNLATSFANLWNSESLADVTLYCE 125
           Q +CL+WN++ S++ ++F NL + E   DVTL CE
Sbjct: 5   QHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 21  QQYCLKWNSFGSNLATSFANLWNSESLADVTLYC-EGELK 137
           Q YCL+WN++ SN+ + F  L  +E+  DVTL C E  LK
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLK 48


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 569 PPDRSTLVQHSENGIV 616
           P D++TL    +NGIV
Sbjct: 204 PKDKATLADQIKNGIV 219


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 569 PPDRSTLVQHSENGIV 616
           P D++TL    +NGIV
Sbjct: 199 PKDKATLADQIKNGIV 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,853
Number of Sequences: 438
Number of extensions: 3483
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)