Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1038
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR...    29   2.1  
At3g56890.1 68416.m06328 F-box family protein-related predicted ...    28   6.3  
At1g76420.1 68414.m08883 no apical meristem (NAM) family protein...    28   6.3  

>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1188

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 551 AFTTSKPPDRSTLVQHSENGIVYCPMNPLS 640
           AF TS+PP     +QHSE  + YC   PL+
Sbjct: 357 AFRTSEPPKE--FLQHSEEVVTYCAGLPLA 384


>At3g56890.1 68416.m06328 F-box family protein-related predicted
           proteins - Arabidopsis thaliana; contains TIGRFAM
           TIGR01640: F-box protein interaction domain
          Length = 219

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 73  NDVARFEPKLFHFRQYCCCCESM 5
           ND  +F+  + H +  C CCE++
Sbjct: 188 NDAKQFKSSISHIKSRCYCCETL 210


>At1g76420.1 68414.m08883 no apical meristem (NAM) family protein
           N-term similar to N-term of NAM GB:CAA63101 [Petunia x
           hybrida] (apical meristem formation), CUC2 GB:BAA19529
           [Arabidopsis thaliana],  GRAB2 protein GB:CAA09372
           [Triticum sp.]
          Length = 334

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
 Frame = +1

Query: 202 GVIYKMRFNLLFR*LTGRGKVGLKLKYICH-------HRF*FTCKLTGFICKLFN 345
           G +  M+  L+F    GR   GLK K++ H       H    TCK    IC++FN
Sbjct: 118 GQLVGMKKTLVF--YKGRAPRGLKTKWVMHEYRLENDHSHRHTCKEEWVICRVFN 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,356,808
Number of Sequences: 28952
Number of extensions: 256545
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)