Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1037
         (647 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VEK9 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  
UniRef50_A1STC6 Cluster: DNA internalization-related competence ...    33   6.0  
UniRef50_Q18568 Cluster: Seven tm receptor protein 220; n=2; Cae...    33   6.0  
UniRef50_Q225I1 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  
UniRef50_Q96N35 Cluster: Transmembrane protein 83; n=2; Homo sap...    33   7.9  

>UniRef50_A4VEK9 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 177

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -2

Query: 508 HFTNMLLKVHFTNIMFSLDKGITLLYFIWTCISLKVSIEINDFIYISFDLDFFFCKIFPI 329
           H   ++       +   LDK I+ +YFI   + L+   +I +  Y+   L FFFC  F I
Sbjct: 25  HIQVIIQNYQLHKMKIQLDKYISSIYFIDYFLYLQFKKQIQNHFYLQIFLHFFFCGDFYI 84


>UniRef50_A1STC6 Cluster: DNA internalization-related competence
           protein ComEC/Rec2; n=1; Psychromonas ingrahamii 37|Rep:
           DNA internalization-related competence protein
           ComEC/Rec2 - Psychromonas ingrahamii (strain 37)
          Length = 798

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = -2

Query: 574 LSVIFNICHNNIDTTINTIH---VHHFTNMLLKVHFTNIMFSLDKGITLLYFIWTCISLK 404
           L+V+F++ H  I   + TI    + +F  +  +  F  + FS D+G  L++F+   + L 
Sbjct: 442 LAVVFSVVHQPIAVLLFTIADRLISYFFIVFEQAKFAYLSFSYDQGSLLIFFVVLIVVLY 501

Query: 403 VSIEINDFIYISFDLDFFF 347
           +  ++    +++  L +FF
Sbjct: 502 ILFKLQ---HVNARLSYFF 517


>UniRef50_Q18568 Cluster: Seven tm receptor protein 220; n=2;
           Caenorhabditis|Rep: Seven tm receptor protein 220 -
           Caenorhabditis elegans
          Length = 350

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 16/64 (25%), Positives = 35/64 (54%)
 Frame = -2

Query: 565 IFNICHNNIDTTINTIHVHHFTNMLLKVHFTNIMFSLDKGITLLYFIWTCISLKVSIEIN 386
           IF I ++ ++ T+  IH  + +++++ +  ++ +FS D  +TL  F W      ++I   
Sbjct: 53  IFEILYSLLEVTLTPIHYSYRSSVVVLITTSDKLFSRDILLTLNSFYWGFFGSSLAIFAI 112

Query: 385 DFIY 374
            F+Y
Sbjct: 113 HFVY 116


>UniRef50_Q225I1 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 82

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +3

Query: 102 LQKKKKKRN*IYHQIQNSRINQFAAKVNFIVLYSF*YKQNKN 227
           + K+K+KRN    QIQ+ +IN+     + IVL SF Y++N N
Sbjct: 4   INKQKRKRN----QIQSQQINKLKELASQIVLNSFLYQKNHN 41


>UniRef50_Q96N35 Cluster: Transmembrane protein 83; n=2; Homo
           sapiens|Rep: Transmembrane protein 83 - Homo sapiens
           (Human)
          Length = 136

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 496 MLLKVHFTNIMFSLDKGITLLYFIWTCISLKVSIEINDFIYISFDLDFFFC 344
           +LL+    ++  SL + + L Y I  C+SL + I +   +Y+S  L  F C
Sbjct: 21  LLLQKISVSLPLSLSQSVCLFYSISLCVSLLLHISLCVSVYVSLSLSSFPC 71


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,359,847
Number of Sequences: 1657284
Number of extensions: 7456949
Number of successful extensions: 16649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16641
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)