Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1037
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    30   0.33 
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    27   3.1  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    26   4.1  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    26   5.4  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.4  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   5.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   5.4  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   7.1  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = -2

Query: 553 CHNNIDTTINTIHVHHFTNMLLKVH-FTNIMFSLDKGITLLY-FIWTCISLKVSIEINDF 380
           C+NN  ++ NT+  ++F+ +L K+  +++    LD    LLY  + + I  + S+ + D+
Sbjct: 284 CYNNYRSSKNTLPKNYFSILLSKLQPYSDFQIILDGMSRLLYPPMQSTIPKRSSLIMFDY 343

Query: 379 IYISFDLDFFFCKIFPIY 326
               + L   FCK+F  Y
Sbjct: 344 ----YPLVLIFCKLFIHY 357


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 547 NNIDTTINTIHVHHFTNMLLKVHFTNIMFS-LDKGITLLY 431
           + I   I++I VH F +  L VHFT + +S L K +   Y
Sbjct: 241 STISIPISSIFVHPFKDPSLLVHFTGLKWSTLMKNLASAY 280


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 217 CLY*KEYKTIKLTFAAN*FIREFCIWWYIQXXXXXXFCKM 98
           CL   E  T K +F  N F  +F + WY++      +C++
Sbjct: 303 CLIDSECLTSKKSFTLNDFTYDFRLPWYLKDDSWKRWCRV 342


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 102 LQKKKKKRN*IYHQIQN 152
           LQKK ++RN + H+IQN
Sbjct: 461 LQKKSQQRNSVSHEIQN 477


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 102 LQKKKKKRN*IYHQIQNSRINQFAAKVNFIVLYSF*YKQNKNDSF 236
           L+ KKKK      ++   R+++F+ +VN  +  SF    +K D F
Sbjct: 60  LKNKKKKDYGKIQRLPGERLSEFSQRVNKAIPVSFKSGPSKIDEF 104


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 510 IISLICYLKFILLTLCFHLIKALRCF 433
           +ISL+C L +I  +  FH +K   CF
Sbjct: 513 VISLVCDLSWIYPSNVFHEVKDSLCF 538


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -1

Query: 335  SYLLSFDSVIIDLKK--RLFS*IRYNNCYLLYGLVKTVIFVLFILKRIQNNKV 183
            SY  +    ++ LK+   LFS IRY   Y LYG   ++ +  F L RI++ KV
Sbjct: 1145 SYFNAIYDFLLKLKRFQELFSSIRYAIYYKLYGNKVSLTYPKFEL-RIKHPKV 1196


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/64 (20%), Positives = 28/64 (43%)
 Frame = -2

Query: 562 FNICHNNIDTTINTIHVHHFTNMLLKVHFTNIMFSLDKGITLLYFIWTCISLKVSIEIND 383
           F + H+     I  +   H    ++ +    I+++ D+G  L   IW   + ++ +   D
Sbjct: 214 FFVLHHTCSVLIIFLIWLHHPRTIVYMKACIIIYAFDRGCRLFRSIWNRSNFRIYLLNED 273

Query: 382 FIYI 371
            IY+
Sbjct: 274 MIYM 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,966
Number of Sequences: 5004
Number of extensions: 36801
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)