Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1037
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49693| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_16097| Best HMM Match : 7tm_1 (HMM E-Value=0.0082)                  28   5.7  
SB_6751| Best HMM Match : Neur_chan_memb (HMM E-Value=1.7e-07)         28   7.5  
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                27   9.9  

>SB_49693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/67 (35%), Positives = 29/67 (43%)
 Frame = -2

Query: 586 SV*QLSVIFNICHNNIDTTINTIHVHHFTNMLLKVHFTNIMFSLDKGITLLYFIWTCISL 407
           S+  L V   I    +  TIN + V H  NM LKV  T  M  +   I +L    T   L
Sbjct: 25  SINMLKVKHTINMMKVKHTINMLKVKHTINM-LKVKHTINMLKVKHTINMLKVKHTINML 83

Query: 406 KVSIEIN 386
           KV   IN
Sbjct: 84  KVKHTIN 90


>SB_16097| Best HMM Match : 7tm_1 (HMM E-Value=0.0082)
          Length = 228

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -3

Query: 504 SLICYLKFILLTLCFHLIKALRCF----ILFGLAYRL 406
           S ICY +F+  T C +LI    C     +L GL Y+L
Sbjct: 32  SQICYRQFMTCTKCLYLIAGAWCLGVAVVLPGLLYKL 68


>SB_6751| Best HMM Match : Neur_chan_memb (HMM E-Value=1.7e-07)
          Length = 213

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 4   DRSTFLFYLSHITLRTAY*IIRLISG 81
           +RSTF FYL H T RT + +++++ G
Sbjct: 189 NRSTF-FYLGHTTARTFHIVLKMLFG 213


>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 510 IISLICYLKFILLTLCFHLIKALRCFI 430
           ++SL CY   +++ LC H++ +L C+I
Sbjct: 128 VLSLGCY---VVMLLCHHVVMSLSCYI 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,077,896
Number of Sequences: 59808
Number of extensions: 229850
Number of successful extensions: 501
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)