Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1037
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-3|AAA83343.2|  350|Caenorhabditis elegans Seven tm recept...    33   0.17 
AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    28   5.0  
AF067944-3|AAC17674.2|  347|Caenorhabditis elegans Seven tm rece...    28   5.0  
Z81544-2|CAB04434.1|  342|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U39678-6|AAK39206.1|  208|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U41991-3|AAA83343.2|  350|Caenorhabditis elegans Seven tm receptor
           protein 220 protein.
          Length = 350

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/64 (25%), Positives = 35/64 (54%)
 Frame = -2

Query: 565 IFNICHNNIDTTINTIHVHHFTNMLLKVHFTNIMFSLDKGITLLYFIWTCISLKVSIEIN 386
           IF I ++ ++ T+  IH  + +++++ +  ++ +FS D  +TL  F W      ++I   
Sbjct: 53  IFEILYSLLEVTLTPIHYSYRSSVVVLITTSDKLFSRDILLTLNSFYWGFFGSSLAIFAI 112

Query: 385 DFIY 374
            F+Y
Sbjct: 113 HFVY 116


>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 445 ITLLYFIWTCISLKVSIEINDFIYISFDLDFFFCKI 338
           + L+Y +W  ++LK  I++  FIY +F    FF  +
Sbjct: 174 LALIYALWKHVNLKGGIDVY-FIYFAFYYTIFFLPV 208


>AF067944-3|AAC17674.2|  347|Caenorhabditis elegans Seven tm
           receptor protein 224 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = -2

Query: 565 IFNICHNNIDTTINTIHVHHFTNMLLKVHFTNIMFSLDKGITLLYFIWTCISLKVSIEIN 386
           +F I ++ +D  +   H  H +  L+ V   + +FS +  + L    W C    +++   
Sbjct: 52  VFEIFYSILDVVLVPQHYSHGSTFLVIVGIKDKLFSPEVLLFLSSCYWRCFGASMAVFAV 111

Query: 385 DFIY 374
            F+Y
Sbjct: 112 HFVY 115


>Z81544-2|CAB04434.1|  342|Caenorhabditis elegans Hypothetical
           protein F49C5.6 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -2

Query: 565 IFNICHNNIDTTINTIHVHHFTNMLLKVHFTNIMFSLDKGITLLY-FIWTCISLKVSIEI 389
           +F + ++ ID  I+  H  H    L+ V   + +     G+T+L  F W C    +++  
Sbjct: 52  VFEMFYSIIDLVIDPQHYSHGPTFLVIVEIKDKLLP-PAGLTVLNTFYWGCFGASMAVFA 110

Query: 388 NDFIY 374
             F+Y
Sbjct: 111 VHFVY 115


>U39678-6|AAK39206.1|  208|Caenorhabditis elegans Hypothetical
           protein C39D10.2 protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 251 LYGLVKTVIFVLFILKRIQNNKVNLRCELIYTR 153
           ++GL +T+ F L +L  ++  K N +C+L+  R
Sbjct: 107 MFGLKETIFFSLAVLCFVEAAKRNAQCDLVCQR 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,185,053
Number of Sequences: 27780
Number of extensions: 197411
Number of successful extensions: 496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)