Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1037
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.48 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -2

Query: 577  QLSVIFNICHNNIDTTINTIHVHHFTNMLLKVHFTNIMFSLDKGITLLYFIWTCISLKVS 398
            Q +VI +     +DT ++T   HH  N    +H T +  + DK    +  + +C S   +
Sbjct: 1658 QRNVISDSESGRLDTEMSTWGYHHNVNKHCTIHRTQVKETDDKICFTMRPVVSCASGCTA 1717

Query: 397  IE 392
            +E
Sbjct: 1718 VE 1719


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 169 SQRRLTLLFCILFNINKTKMTVFTKP*SK*QLLYRIHENKR--FFKSM 306
           ++   T++FC   +I+++  T++    +  QLL+  ++ K+  FF +M
Sbjct: 339 AENNTTMVFCNDLSIDRSTNTMYVLSDNFQQLLFSKYDAKKRNFFITM 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,110
Number of Sequences: 438
Number of extensions: 2265
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)