Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1035
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0243 - 16791789-16793306 33 0.18
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 31 0.73
10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841 31 0.73
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33... 31 0.73
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 29 3.0
03_05_0097 - 20760742-20761010,20761061-20761241 29 3.0
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 28 3.9
06_02_0210 - 13039479-13039566,13039674-13039770,13040470-130405... 28 5.2
02_05_1086 + 33994295-33994402,33994485-33994674,33994734-339947... 27 6.8
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042... 27 9.0
>02_03_0243 - 16791789-16793306
Length = 505
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 45 TALL-ACTAAAPGLLLHEAPVVAAVHTPVIHTVPIVAAKTTVTKSSQVVNHGS 200
T LL AC A APG+ +H A A T +HT + A T V++ S
Sbjct: 159 TVLLPACRALAPGVTVHHAACDGASSTHFLHTWAAICAGAAATPPPPVIDRTS 211
>11_06_0425 - 23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 30.7 bits (66), Expect = 0.73
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Frame = -1
Query: 263 GPRCGMDHGCGMDHRGGMYQSGTMVDNLAA--LGHSCLSGHDGDSVDNWSMDSSYHWGFV 90
G CG GCG GGM + ++ + G C G G +M+SS G V
Sbjct: 794 GSGCG--GGCGGGCGGGMVMEASKAGHVKSGGCGSGCGGGCGGGCGGGVAMESSKA-GHV 850
Query: 89 EEQ---AGCSGGAGQECG 45
+ +GC GG G CG
Sbjct: 851 KSGGCGSGCGGGCGGGCG 868
>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
Length = 348
Score = 30.7 bits (66), Expect = 0.73
Identities = 21/60 (35%), Positives = 24/60 (40%)
Frame = -1
Query: 512 PPRAAADRXXXXFLMGSIIIYF*KINDEQRSGAKS*RWECGGAPRRNCERWQRGRSSQLQ 333
PPRA L S F + D R + R E G R + E W RGR S LQ
Sbjct: 71 PPRALVHSSLPAHLAASCR-RFATLPDASREKGEKQRLEAEGEGRWSVEHWSRGRRSDLQ 129
>05_01_0048 +
331155-333077,333208-333354,333540-334087,334481-334616
Length = 917
Score = 30.7 bits (66), Expect = 0.73
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 254 CGMDHGCGMDHRGGMYQSGTMVDNLAALGHSCLSGH 147
CG H C + G +Y G N+ LGH +GH
Sbjct: 136 CGEFHTCAVTTTGELYTWGDGTHNVGLLGHGTDAGH 171
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 173 LGHSCLSGH--DGDSVDNWSMDSSYHWGFVEEQ 81
L H CLSGH DG + S++ Y W + +E+
Sbjct: 1386 LAHRCLSGHGEDGRCILPQSLEKLYIWEYSQER 1418
>03_05_0097 - 20760742-20761010,20761061-20761241
Length = 149
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 149 HDGDSVDNWSMDSSYHWGFVEEQA-GCSGGAGQECGENN 36
HDG+SVD+++M + G V A G GQ CGE +
Sbjct: 106 HDGESVDDFAMHIN---GLVASLAQAWRGNGGQPCGEED 141
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 148 WPLRQL*PRAAKLSTMVPLWYIPPLWSMPHPW 243
WP + + P + +VP+ +PPLWS W
Sbjct: 355 WPPQLMVPAPGICTPVVPIPLVPPLWSCFPGW 386
>06_02_0210 -
13039479-13039566,13039674-13039770,13040470-13040545,
13041222-13041356
Length = 131
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 45 TALLACTAAAPGLLLHEA--PVVAAVHTPVIHTVPIVAAKTTVTKSSQ 182
T+ L TAA+P LLL A P+ A+ PV + KT T++ Q
Sbjct: 4 TSSLTATAASPPLLLKPAPSPLAASFLRPVSRFSRFQSVKTKATENDQ 51
>02_05_1086 +
33994295-33994402,33994485-33994674,33994734-33994789,
33995413-33995550,33995655-33995848,33996125-33996467
Length = 342
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 121 VWTAATTGASWRSRPGAAAVQARSAVK 41
VW AT A W+ +PG + V V+
Sbjct: 45 VWVGATNNAEWQPQPGCSKVAGPCLVR 71
>04_04_1657 -
35102751-35102868,35102987-35103504,35104065-35104211,
35104289-35106262,35106964-35107089,35107178-35107264,
35107335-35107424,35107725-35107811,35108248-35108300,
35109339-35109387
Length = 1082
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = -1
Query: 254 CGMDHGCGMDHRGGMYQSGTMVDNLAALGHSCLSGH 147
CG H C + G +Y G N LGH H
Sbjct: 345 CGEFHTCAITATGDLYTWGDGTHNAGLLGHGSNVSH 380
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,403,277
Number of Sequences: 37544
Number of extensions: 273835
Number of successful extensions: 1032
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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