Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1035
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)                 31   0.43 
SB_56198| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)                     27   9.3  
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)                  27   9.3  

>SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)
          Length = 1102

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = -1

Query: 251  GMDHGCGMDHRGGMYQSGTMVDNLAALGHSCLSGHDGDSVDNWS-MDSS---YHWGFVEE 84
            GM++G GM++  GM   G M +N A + +      +G  ++N + M++     + G +E 
Sbjct: 952  GMENGAGMENGAGMENGGGM-ENGAGMENGA-GMENGAGMENGAGMENGAGMENGGGMEN 1009

Query: 83   QAGCSGGAGQECGENNE 33
             AG   GAG E G   E
Sbjct: 1010 GAGMENGAGMENGAGME 1026



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = -1

Query: 251  GMDHGCGMDHRGGMYQSGTMVDNLAALGHSCLSGHDGDSVDNWSMDSSYHWGFVEEQAGC 72
            GM++G GM++  GM ++G  ++N A + +      +G  ++N +     +   +E  AG 
Sbjct: 940  GMENGAGMENGAGM-ENGAGMENGAGMENGG-GMENGAGMENGA--GMENGAGMENGAGM 995

Query: 71   SGGAGQECGENNE 33
              GAG E G   E
Sbjct: 996  ENGAGMENGGGME 1008



 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -1

Query: 251  GMDHGCGMDHRGGMYQSGTMVDNLAAL 171
            GM++G GM++ GGM ++G  ++N A +
Sbjct: 1042 GMENGAGMENGGGM-ENGAKMENGAGM 1067


>SB_56198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
 Frame = -1

Query: 251 GMDHGCGMDHRGGMYQSGTMVDNLAALGH-SCLSGHDGDSVDNWSMDSSYHWGFVEEQAG 75
           G   G   D   G   +G   D LA   H S LSG DG    N  ++    WG VE    
Sbjct: 6   GEGAGRHADELPGREGAGRGADELAGGVHGSVLSGDDGVGRLNPMVEFQQFWGAVEASNP 65

Query: 74  C 72
           C
Sbjct: 66  C 66


>SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)
          Length = 356

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +3

Query: 75  PGLLLHEAPVV-----AAVHTPVIHTVPIVAAKTTVTKSSQVVNHGST 203
           P ++ H+ P+V       V+ P++H+      +  V +S+  + H ST
Sbjct: 197 PAIIYHQPPIVFHQPPPVVNQPILHSHDTYVTRPRVYQSTSHIGHAST 244


>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 683

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 185 CQPWFHSGTFRPCGPCRTRGP 247
           C+P F++ T   C PC  +GP
Sbjct: 62  CKPGFYNMTSEGCRPCDCKGP 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,100,887
Number of Sequences: 59808
Number of extensions: 265402
Number of successful extensions: 711
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)