Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1035
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    28   0.066
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   3.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   5.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 0.066
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 245 DHGCGMDHRGGMYQSGTMVDNLAALGHS 162
           DHG GMD  GG Y+S +    +  +GH+
Sbjct: 99  DHGSGMDGMGG-YRSASPSPGMGHMGHT 125


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 373 FLRGAPPHSHRQD 411
           FLR  PP+SH+ D
Sbjct: 144 FLRTVPPYSHQTD 156


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 93  EAPVVAAVHTPVIHTVPIVAAKTTVTKSSQVVNH 194
           + P++  +  PV+ +     +  T TKS+ V NH
Sbjct: 311 QCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNH 344


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 51  LLACTAAAPGLLLHEAPVVAAVHTPVIH 134
           LLA    A G + H  P  A  H  ++H
Sbjct: 8   LLALLTLAAGEIAHNDPHFAPGHDAIVH 35


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 1   DLKKNQQK*NLSLFSPHSWPAPPLHP 78
           D+  +QQ  NLS  SP   P P + P
Sbjct: 867 DIADSQQPLNLSKKSPSPSPRPLVGP 892


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 172 RAAKLSTMVPLWYIPPLWSMPHPW 243
           RA  L   V L ++P   S  HPW
Sbjct: 108 RAKSLGLKVILDFVPNHSSHEHPW 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,631
Number of Sequences: 438
Number of extensions: 2613
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)