Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1035
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR...    27   5.7  
At5g07220.1 68418.m00823 BAG domain-containing protein contains ...    27   7.6  
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat...    27   7.6  

>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
            class), putative similar to zinc finger protein
            (GI:15811367) [Arabidopsis thaliana]; similar to
            TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
            to disease resistance protein RPP1-WsB (GI:3860165)
            [Arabidopsis thaliana]
          Length = 1996

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 254  CGMDHGCGMDHRGGMYQSGTMVDNLAALGHSCLSGH 147
            CG  H C +   G ++  G  + N+  LGH     H
Sbjct: 1261 CGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGSDLSH 1296


>At5g07220.1 68418.m00823 BAG domain-containing protein contains
           Pfam:PF02179 BAG domain
          Length = 303

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 145 MGTVWITGVWTAATTGASWRSRPGAAAVQARS 50
           M T     V    T+G  W SRPG   VQ R+
Sbjct: 4   MNTGTSPSVIGGGTSGNEWESRPGGMVVQRRT 35


>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1028

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 254 CGMDHGCGMDHRGGMYQSGTMVDNLAALGH 165
           CG  H C +   G +Y  G    N+  LGH
Sbjct: 346 CGDFHTCAITQSGDLYSWGDGTHNVDLLGH 375


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,342,546
Number of Sequences: 28952
Number of extensions: 179351
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)