Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1033
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 194 1e-50
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 109 4e-25
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 105 7e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 97 1e-21
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 73 5e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 72 6e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 62 5e-11
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 50 3e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 34 0.020
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.080
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.24
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.3
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 3.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.0
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 26 4.0
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 5.2
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 6.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 6.9
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 6.9
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 25 6.9
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 6.9
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 6.9
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.9
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 9.1
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 25 9.1
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 25 9.1
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 9.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 194 bits (472), Expect = 1e-50
Identities = 95/126 (75%), Positives = 97/126 (76%)
Frame = +1
Query: 253 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 432
PIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN
Sbjct: 70 PIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNA 129
Query: 433 PAMYVAIQAVLSLYASGRTTGIVLDSATVSPTPYPSTRDTHSPTPSCVWTWPGRDLTDYL 612
PA YVAIQAVLSLYASGRTTGIVLDS P P GRDLTDYL
Sbjct: 130 PAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYL 189
Query: 613 MKILTE 630
MKIL E
Sbjct: 190 MKILME 195
Score = 143 bits (347), Expect = 2e-35
Identities = 64/69 (92%), Positives = 68/69 (98%)
Frame = +2
Query: 50 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 229
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 230 RGILTLKYP 256
RGILTLKYP
Sbjct: 62 RGILTLKYP 70
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 109 bits (261), Expect = 4e-25
Identities = 56/123 (45%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Frame = +1
Query: 247 QIPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 423
Q PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 424 FNTPAMYVAIQAVLSLYASGRTTGIVLDSATVSPTPYPSTRDTHSPTPSCVWTWPGRDLT 603
N PA+ ++Q VL+LYAS RTTGIVL+ P P+ GRD+T
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVT 191
Query: 604 DYL 612
DYL
Sbjct: 192 DYL 194
Score = 78.6 bits (185), Expect = 7e-16
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +2
Query: 68 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 247
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 248 KYP 256
+ P
Sbjct: 72 QRP 74
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 105 bits (251), Expect = 7e-24
Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 3/127 (2%)
Frame = +1
Query: 253 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 432
P+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE +
Sbjct: 70 PMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGF 129
Query: 433 PAMYVAIQAVLSLYASGRTTGIVLDS---ATVSPTPYPSTRDTHSPTPSCVWTWPGRDLT 603
+YVAIQAVLSLYA G ++G+V+DS T Y S H V GRD T
Sbjct: 130 GGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDV---AGRDAT 186
Query: 604 DYLMKIL 624
YL+ +L
Sbjct: 187 RYLISLL 193
Score = 65.7 bits (153), Expect = 5e-12
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Frame = +2
Query: 56 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 229
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 230 RGILTLKYP 256
R +L +KYP
Sbjct: 62 RSLLQVKYP 70
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 97.5 bits (232), Expect = 1e-21
Identities = 43/88 (48%), Positives = 57/88 (64%)
Frame = +1
Query: 253 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 432
PI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+FN
Sbjct: 93 PIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNC 152
Query: 433 PAMYVAIQAVLSLYASGRTTGIVLDSAT 516
+Y+A+QAVL+L AS ++ + S T
Sbjct: 153 AGLYIAVQAVLALAASWTSSKVTDRSLT 180
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 68 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 217
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
Score = 31.9 bits (69), Expect = 0.080
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 510 GDGVSHTVPIYEGYALPHAILRLDLA 587
GDGV+H +P+ EGY + +I + LA
Sbjct: 187 GDGVTHIIPVAEGYVIGSSIKTMPLA 212
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 72.5 bits (170), Expect = 5e-14
Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Frame = +1
Query: 253 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 432
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 433 PAMYVAIQAVLSLYASGR--TTGIVLDSATVSPTPYPSTRDTHSPTPSCVWTWPGRDLTD 606
P++ I + S Y + + ++GIVL+ + P + + +W G +
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSS 204
Query: 607 YLMKI 621
YL+K+
Sbjct: 205 YLLKL 209
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 68 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 163
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 72.1 bits (169), Expect = 6e-14
Identities = 33/84 (39%), Positives = 48/84 (57%)
Frame = +1
Query: 256 IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 435
I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MFE+ P
Sbjct: 69 IRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCP 128
Query: 436 AMYVAIQAVLSLYASGRTTGIVLD 507
A Y+A Q + +ASG+ T ++D
Sbjct: 129 ATYLAKQETCAAFASGKGTACLVD 152
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 53 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 154
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 62.5 bits (145), Expect = 5e-11
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Frame = +1
Query: 262 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 441
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 442 YVAIQAVLSLYASGRTTGIVLD--SATVSPTP 531
Y+ QAV +A+ ++T +++D S S TP
Sbjct: 134 YLTKQAVCVAFANSKSTALIVDIGSDNASVTP 165
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 53 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 223
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 50.0 bits (114), Expect = 3e-07
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Frame = +1
Query: 238 PDPQIPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMT 405
P+ PI+ G V +W+ ++ W H Y+ L P + +PV L +RE T
Sbjct: 108 PNEIQPIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELAT 166
Query: 406 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSATVSPTPYPSTRDTHSPTPSCVWTW 585
Q FE P +A + ++ LYA G G+V+D P T +
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPL 226
Query: 586 PGRDLTDYLMKILTE 630
GR +T +L +L E
Sbjct: 227 GGRYMTQHLQNLLRE 241
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 463 LSLYASGRTTGIVLDSATVSPTPYPSTRDTHSPTPSCVWTW 585
L Y + + T +L T+ PTPYP+ + P +W
Sbjct: 431 LEPYYAAQGTDSILGMTTMPPTPYPALINPCKILPDYFPSW 471
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 33.9 bits (74), Expect = 0.020
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 113 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPSNTESSL 277
G+ PRA F ++ P H G+++ M KD G+E S +G + + P N S +
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTPENEISEV 554
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.080
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 313 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 456
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.24
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 210 PTYESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 49
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 213 SPTYESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 97
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 191 QKDSYVGDEAQSKRGILTLKYPSNTESSLTGMTWRRFGIIPSTMSCVS 334
+KD+ V E SK T YP ++ S LT + + + +SC S
Sbjct: 143 EKDNLVNSEYSSKYSSTTRIYPYHSLSQLTDLLTDGSFYVSTNISCFS 190
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 355 LLTEAPLNPKANREKMTQIMFETFN 429
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +1
Query: 391 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSATVSPTPYPSTRDTHSPTP 567
RE++ Q+ + P+ Y+ LS Y S + P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPYRSPNSY----------PSLLPSTHSPHSPAP 182
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 107 NRPCTYRSHCLLPTRQLP 54
NRP YRSH + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 211 TYVRVLLSHTDHHALMAGPSDDRGEYGARSIISCETGLAHTG 86
TY +LL D + + G +DR + + + + C L H+G
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 461 CSRCTRPVVPPVSCWTRRRCLPHRTHLRGIR 553
CS CT + P S W+ C H HL IR
Sbjct: 197 CSVCTDTINPSTSIWSCGTCY-HVFHLSCIR 226
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 250 FEGQDTSFALCLVTYVRVLLSHTDHHA 170
+EG+DT+ Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/52 (32%), Positives = 19/52 (36%)
Frame = +1
Query: 448 AIQAVLSLYASGRTTGIVLDSATVSPTPYPSTRDTHSPTPSCVWTWPGRDLT 603
AI +L Y R G V DS + S WTWPG LT
Sbjct: 23 AIVMILVTYVLKRYVGEVQDSEHFTTASRSVKTGLISSAVVSSWTWPGTLLT 74
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 514 SPSPARYRWYDRTRTAR 464
SP+P +Y YDR R +R
Sbjct: 184 SPTPGKYMGYDRRRNSR 200
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = +1
Query: 367 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSATVSPTPYPSTR 546
AP P + + F +FN+ A +A + + ++ + SAT++ T +P+
Sbjct: 170 APSKPNRSPPLKPEDPFASFNSSASAIAAASKSAAASASALSSDTGRSATMNSTTFPTAM 229
Query: 547 DTHSPT 564
+ S T
Sbjct: 230 KSQSTT 235
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 6.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 461 CSRCTRPVVPPVSCWTRRRCL 523
C RP++ + W +RRCL
Sbjct: 185 CDPRVRPLIVMIKYWAKRRCL 205
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 9.1
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -1
Query: 237 IPLLLCASSPTYESFCPIPTI-TP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAA 61
IP L ++P +F P P++ +P + T +TA ++SP L P + TN +
Sbjct: 363 IPSPLQNTNPAPSTF-PNPSVASPAFPNSSTSNPSTAPASASPLASTLK-PSTANDTNGS 420
Query: 60 TSSS 49
+SSS
Sbjct: 421 SSSS 424
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +1
Query: 250 IPIEHGIVTNWDDME-KIWH--HTFYNELRVAPEEHPVLLTEAPLNP 381
+P + ++ + DD +W+ HTF+++ + P EH + ++++ +NP
Sbjct: 265 VPQGNFVIGSADDRTLNVWNLRHTFHHKGKTRPPEHRI-VSQSIINP 310
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -2
Query: 194 SVPYRPSRPDGGAFR 150
SVPY PS+P+GGA++
Sbjct: 87 SVPY-PSKPNGGAYQ 100
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 369 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYH 491
+PQ + E++ D++R++ +RH RR P +A + R H
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREH 1465
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,050
Number of Sequences: 5004
Number of extensions: 68191
Number of successful extensions: 257
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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