Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1033
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   5.7  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   5.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 325  LRVAPEEHPVLLTEAPLNPKANREKM 402
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = +1

Query: 460 VLSLYASGRTTGIVLDSATVSPTPYPSTRDTHSPTPSCVWTW 585
           +  +Y    +      S TVS T  PST +  + T   +  W
Sbjct: 385 ICDVYGVNESVSYERGSMTVSVTSKPSTMERQTQTEVWIPKW 426


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +1

Query: 472 YASGRTTGIV-LDSATVSPTPYPSTRDTHSPTPSCV 576
           +  G T  +  L+S T   TP   T D H     CV
Sbjct: 65  FMDGNTLNVEKLESGTRELTPDDFTEDVHEIIEQCV 100


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +1

Query: 472 YASGRTTGIV-LDSATVSPTPYPSTRDTHSPTPSCV 576
           +  G T  +  L+S T   TP   T D H     CV
Sbjct: 65  FMDGNTLNVEKLESGTRELTPDDFTEDVHEIIEQCV 100


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 89  GMCKAGFAGD 118
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,366
Number of Sequences: 438
Number of extensions: 5072
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)