Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1032
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   5.0  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   8.7  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   8.7  

>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +3

Query: 333 RVYPKHPVSHYPLQLNNAIHTRIVTMTIVSQINSDTVIYCPRKIKHTLYVAAVTSPRPR 509
           ++Y K P    P + N+A+ +++    +VS++ S TVI+   +I + LY+ +  S   R
Sbjct: 59  KIYSKIP----PEENNDALFSKL--SNLVSRLKSQTVIHNKSQILYFLYLLSPISQSSR 111


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 114 STCEVQASTFRPKF--PAHPV*YNLLQLYNAILTQI 215
           STC+  A TF PKF         NL  L+ A++ QI
Sbjct: 163 STCKYSAFTFLPKFLKEQFSKYANLFFLFTAVVQQI 198


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 118 LVKFRRLPSDQNSLRILYNITCFNFTTRFLHR 213
           L+K +RLP   N+L I + I   N + R ++R
Sbjct: 129 LIKTKRLPKPFNNLLIQFQIQVPNVSRRTVYR 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,148
Number of Sequences: 5004
Number of extensions: 39283
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)