Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1032
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0)                       29   2.3  
SB_20210| Best HMM Match : TPR_1 (HMM E-Value=4.1e-40)                 29   2.3  
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               29   4.0  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.2  
SB_20166| Best HMM Match : Kinesin (HMM E-Value=0)                     28   5.2  
SB_54912| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_47754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  

>SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1073

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +3

Query: 321 SPNPRVYPKHPVSHYPLQLNNAIHTRIVTMTIVSQINSDTVIYCPRKIKHTLYVAAVTSP 500
           +P+P   P+ P+ H PL+    +  R++   I   +    V++ P      +   AV  P
Sbjct: 762 TPHPPTCPETPIHHDPLE----VLYRLLISPIEDHLTEPEVVFIPEDFTFMIAFGAVKDP 817

Query: 501 RPRS*GTLATVRS 539
             R    L  +R+
Sbjct: 818 DGRFLAELKRIRT 830


>SB_20210| Best HMM Match : TPR_1 (HMM E-Value=4.1e-40)
          Length = 772

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +3

Query: 321 SPNPRVYPKHPVSHYPLQLNNAIHTRIVTMTIVSQINSDTVIYCPRKIKHTLYVAAVTSP 500
           +P+P   P+ P+ H PL+    +  R++   I   +    V++ P      +   AV  P
Sbjct: 461 TPHPPTCPETPIHHDPLE----VLYRLLISPIEDHLTEPEVVFIPEDFTFMIAFGAVKDP 516

Query: 501 RPRS*GTLATVRS 539
             R    L  +R+
Sbjct: 517 DGRFLAELKRIRT 529


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 324  PNPRVYPK-HPVSHYPLQLNNAIHTRIVTMTIVSQINSDTVIYCPRKIKHTLYVAAVTSP 500
            P+P V P   P    P  + +++ T +V+ T+++   + T +        +   +AVTS 
Sbjct: 831  PSPTVVPTVPPAKPVPTPVVSSLTTPLVSATVLNASQAQTRVATSVAAPTSAQYSAVTSS 890

Query: 501  RPRS*GTLATVRS 539
             PR  G    +++
Sbjct: 891  SPRGQGVAGAIQT 903


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 27   QFGRASPARHHYSGPWTSD 83
            ++G++S  RH+  GPW +D
Sbjct: 1638 KYGKSSSCRHYKGGPWAND 1656


>SB_20166| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 378

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 250 DCL*DNASSESTICVRIAL*S*SRLYYTGCAGNFGLK 140
           DCL DN  +   +C+  +L   S +  T C+ NFGL+
Sbjct: 243 DCLGDNGKTNFIVCIAPSL---SEVNETKCSLNFGLR 276


>SB_54912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 330 PRVYPKHPVSHYPLQL 377
           P+ YP HP+ HYP  L
Sbjct: 51  PQYYPTHPIPHYPNSL 66


>SB_47754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 27  QFGRASPARHHYSGPWTSD 83
           ++G++S  RH+  GPW +D
Sbjct: 74  KYGKSSSCRHYKGGPWAND 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,423,252
Number of Sequences: 59808
Number of extensions: 318050
Number of successful extensions: 727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)