Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1032
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06610.1 68418.m00747 expressed protein contains Pfam profile...    29   2.4  
At2g43570.1 68415.m05413 chitinase, putative similar to chitinas...    27   7.5  
At2g02640.1 68415.m00203 DC1 domain-containing protein   contain...    27   7.5  
At2g02610.1 68415.m00200 DC1 domain-containing protein   contain...    27   7.5  

>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 368

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 372 QLNNAIHTRIVTMTIVSQINSDTVIYCPRKIKH 470
           ++ N   T  +TMT+VS INS T +     + H
Sbjct: 100 EIKNTFVTGKITMTMVSDINSSTAVSSASSVSH 132


>At2g43570.1 68415.m05413 chitinase, putative similar to chitinase
           class IV GI:722272 from [Brassica napus]
          Length = 277

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 182 QVILYRMRREFWSEGRRLNFTSGFGWNLTEVASV*C 75
           QV+ ++    FW+   R +F SGFG  +  V S  C
Sbjct: 209 QVLAFKTAFWFWTTNVRTSFKSGFGATIRAVNSREC 244


>At2g02640.1 68415.m00203 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 366 PLQLNNAIHTRIVTMTIVSQINSDTVIYCPRKIKHTLYVAAV 491
           PL+++   HT+       S+   D  IYC ++  + +Y  A+
Sbjct: 149 PLEISYPTHTKHSLQLFYSKYRFDHCIYCRKRATYMIYFCAL 190


>At2g02610.1 68415.m00200 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 366 PLQLNNAIHTRIVTMTIVSQINSDTVIYCPRKIKHTLYVAAV 491
           PL+++   HT+       S+   D  IYC ++  + +Y  A+
Sbjct: 149 PLEISYPTHTKHSLQLFYSKYRFDHCIYCRKRATYMIYFCAL 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,425
Number of Sequences: 28952
Number of extensions: 203509
Number of successful extensions: 493
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)