Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1031
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 141 7e-35
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 134 1e-32
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 117 1e-27
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 113 3e-26
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 82 6e-17
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 51 1e-07
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 42 1e-04
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 30 0.24
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 29 0.74
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.74
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.3
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 2.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 5.2
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 5.2
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 25 6.9
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 25 9.1
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 9.1
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 9.1
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 141 bits (342), Expect = 7e-35
Identities = 64/86 (74%), Positives = 74/86 (86%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 429
PHNTIFDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPA 507
VL KM+ETAEAYLG V +AV+TVPA
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPA 146
Score = 112 bits (269), Expect = 5e-26
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +2
Query: 80 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 253
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 61
Score = 38.7 bits (86), Expect = 7e-04
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 510 FNDSQRQATKDAGSISGLN 566
FNDSQRQATKDAG I+GLN
Sbjct: 148 FNDSQRQATKDAGLIAGLN 166
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 134 bits (323), Expect = 1e-32
Identities = 60/86 (69%), Positives = 72/86 (83%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 429
PHNTIFDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPA 507
VL KM+E+AEA+LG V +AV+TVPA
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPA 146
Score = 112 bits (269), Expect = 5e-26
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +2
Query: 80 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 253
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 61
Score = 38.7 bits (86), Expect = 7e-04
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 510 FNDSQRQATKDAGSISGLN 566
FNDSQRQATKDAG I+GLN
Sbjct: 148 FNDSQRQATKDAGLIAGLN 166
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 117 bits (282), Expect = 1e-27
Identities = 63/123 (51%), Positives = 77/123 (62%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 429
P NT+FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+M
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPASSMTLKDKPQKMQVPSQA*TVLPNHQLNPLLAAI 609
VLTKMKE +EA L K V+ AVITVPA + K VL P AAI
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIIN-EPTAAAI 183
Query: 610 AYG 618
AYG
Sbjct: 184 AYG 186
Score = 100 bits (239), Expect = 2e-22
Identities = 45/58 (77%), Positives = 51/58 (87%)
Frame = +2
Query: 80 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 253
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNP 65
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 113 bits (271), Expect = 3e-26
Identities = 59/123 (47%), Positives = 80/123 (65%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 429
P NTIFD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPASSMTLKDKPQKMQVPSQA*TVLPNHQLNPLLAAI 609
+L+KMK+TAEAYLGK V +AV+TVPA + + K V+ P AAI
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVI-RIVNEPTAAAI 212
Query: 610 AYG 618
AYG
Sbjct: 213 AYG 215
Score = 98.3 bits (234), Expect = 8e-22
Identities = 43/57 (75%), Positives = 50/57 (87%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 253
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNP 94
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 82.2 bits (194), Expect = 6e-17
Identities = 47/123 (38%), Positives = 66/123 (53%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 429
P NT F KRLIGR+F++ VQ D+K P+++V + KT+ P ++
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGGF 166
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPASSMTLKDKPQKMQVPSQA*TVLPNHQLNPLLAAI 609
+L+KM+ETA YLGK V+NAV+TVPA + + K VL P AA+
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVL-RVVNEPTAAAL 225
Query: 610 AYG 618
AYG
Sbjct: 226 AYG 228
Score = 73.3 bits (172), Expect = 3e-14
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +2
Query: 71 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 247
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 248 NPTTQY 265
NP +
Sbjct: 109 NPENTF 114
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/61 (34%), Positives = 39/61 (63%)
Frame = +2
Query: 68 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 247
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 248 N 250
N
Sbjct: 63 N 63
Score = 41.9 bits (94), Expect = 7e-05
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 NTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMV 432
NT+ KRL GR ++D ++ + ++ G KV Y E+ F ++ +
Sbjct: 66 NTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAY 125
Query: 433 LTKMKETAEAYLGKTVQNAVITVPA 507
TK+K AEA L +V + VI++PA
Sbjct: 126 FTKIKAIAEAELIGSVSDVVISIPA 150
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 250
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRN 82
Score = 29.1 bits (62), Expect = 0.56
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = +1
Query: 256 NTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGED------KTFFPEE 417
N++ + + L+G+ ++ T+ H+ V+ G+ K+ + ++ K E
Sbjct: 85 NSVTNFRDLLGKSHDELTLHHC--HYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHE 142
Query: 418 VSSMVLTKMKETAEAYLGKTVQNAVITVP 504
S L ++ E+AE +LG V V++VP
Sbjct: 143 ASVRHLRRLTESAEDFLGTKVNGCVMSVP 171
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 30.3 bits (65), Expect = 0.24
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTT 259
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPA- 83
Query: 260 QYSMPNV 280
+S+ NV
Sbjct: 84 -HSIRNV 89
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 28.7 bits (61), Expect = 0.74
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 179 PSYVAFTDTERLIGDAAKNQVAMNPTTQYSMPNVSSDVSSKMLLC 313
P +A T ER++ AAK A+N T Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.74
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 75 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 170
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 551 GTCIFCGLSLRVIEDAGTVITAFCTVLPR*ASAVSFIF 438
G C+FCGL+ D+ T+ C R A+ +S ++
Sbjct: 1827 GLCLFCGLTKFEHADSDMAYTSDCRSWARKANLISLVY 1864
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 551 GTCIFCGLSLRVIEDAGTVITAFCTVLPR*ASAVSFIF 438
G C+FCGL+ D+ T+ C R A+ +S ++
Sbjct: 1827 GLCLFCGLTKFEHADSDMAYTSDCRSWARKANLISLVY 1864
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 627 LSRPVSNRSKQWVQLMIRENGSSLRWNLHL 538
LS V +K+W+Q M EN ++ NLH+
Sbjct: 622 LSESVPFATKEWIQDMHAENSFNMYKNLHI 651
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 108 TLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRTRWR*TPQHNI 266
T +L S+STG+ T++ T L + PS S+ P T + TP +NI
Sbjct: 282 TSSLTSNSTGK-----TSKTTDLLIAASKKSLPSNSTPSKPNTSFFETPHNNI 329
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Frame = -1
Query: 494 ITAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPL-----------YATLILGLPPSL 348
I++ T+L + S + +S+ + S +LSS + Y++ ++ +L
Sbjct: 618 ISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTL 677
Query: 347 TTSKGQCFMSACTVASSNLRPMRRLASNIVLWGSS 243
+S +S+ VASS+ P+ +S + + +S
Sbjct: 678 VSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSAS 712
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 4.0
Identities = 24/90 (26%), Positives = 42/90 (46%)
Frame = -1
Query: 509 DAGTVITAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQ 330
++ T IT+ V S + S+ +TSS S+P+ ++ +L +T+S G
Sbjct: 883 NSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTGL 942
Query: 329 CFMSACTVASSNLRPMRRLASNIVLWGSSP 240
+ T +SS L + S+ VL S+P
Sbjct: 943 NTSTPIT-SSSVLNSSTPITSSTVLNSSTP 971
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 161 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARL 3
G W SP S + H ++++ +F +RVL C+ L K +K+A L
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALL 323
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 224 AAKNQVAMNPTTQYSMPNVSSDVSSKML 307
A K Q+ +NP + +PNV D + +L
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLL 350
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 392 KTKPFSPRKSVPWCLRK*RKLPKLISAKLCRMQLSRFPRLQ 514
+ K KSVP C + + K IS K+ R+Q + P Q
Sbjct: 16 RPKDIKSIKSVPICEKHRASVVKDISRKISRIQSATLPEYQ 56
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 390 TLICYLDLRFASITDNLERPVLHVGLHSSIFELTSDETFGI 268
T I L + S+TDN+ER + +G + I +TS F +
Sbjct: 142 TNIALLLATYPSVTDNIER-FIFMGGSTGIGNITSQAEFNV 181
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -1
Query: 350 LTTSKGQCFMSACTVASSNLRPMRRLASNIVLWGSSPPGSWRHL 219
L S+ + ++S V +RP + + +IV+ GS++H+
Sbjct: 1173 LNASQAEAYLSKMQVGDLVIRPSSKGSDHIVVTWKVAEGSYQHI 1216
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 61 QNGKSTRSRNRSGYHVLLRWCLPARE 138
+NGK T +R +S + W P++E
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE 502
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,319
Number of Sequences: 5004
Number of extensions: 63760
Number of successful extensions: 238
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -